RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 ITGALP20701 1170 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 XPAP23025 273 aaPredicted RBP16.6■□□□□ 0.25
CPSF4-201ENST00000292476 ME2P23368 584 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 ADARP55265 1226 aaKnown RBP16.6■□□□□ 0.25
CPSF4-201ENST00000292476 ARHGEF7Q14155 803 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 CSHL1Q14406 222 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 PDCD2Q16342 344 aaPredicted RBP16.6■□□□□ 0.25
CPSF4-201ENST00000292476 HNRNPA1L2Q32P51 320 aaKnown RBP16.6■□□□□ 0.25
CPSF4-201ENST00000292476 GPR33Q49SQ1 333 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 ZNF805Q5CZA5 627 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 ZRANB3Q5FWF4 1079 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 RBM20Q5T481 1227 aaKnown RBP16.6■□□□□ 0.25
CPSF4-201ENST00000292476 DSG4Q86SJ6 1040 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 CHST14Q8NCH0 376 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 SORCS1Q8WY21 1168 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 OR8D1Q8WZ84 308 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 PLA2G2FQ9BZM2 168 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 BRD9Q9H8M2 597 aa16.6■□□□□ 0.25
CPSF4-201ENST00000292476 OTOL1A6NHN0 477 aaPredicted RBP16.59■□□□□ 0.25
CPSF4-201ENST00000292476 PRRT4C9JH25 899 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 AHCYL1O43865 530 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 SKAP2O75563 359 aaPredicted RBP16.59■□□□□ 0.25
CPSF4-201ENST00000292476 LEFTY1O75610 366 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 BCAS2O75934 225 aaPredicted RBP16.59■□□□□ 0.25
CPSF4-201ENST00000292476 SORBS2O94875 1100 aaKnown RBP16.59■□□□□ 0.25
CPSF4-201ENST00000292476 FESP07332 822 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 SPAM1P38567 509 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 OPRD1P41143 372 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 PTGER3P43115 390 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 SUOXP51687 545 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 THOP1P52888 689 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 IRX1P78414 480 aaPredicted RBP16.59■□□□□ 0.25
CPSF4-201ENST00000292476 STX5Q13190 355 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 MED21Q13503 144 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 FLOT2Q14254 428 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 TRIP10Q15642 601 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 CDKN3Q16667 212 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 ARSIQ5FYB1 569 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 SNX20Q7Z614 316 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 RAVER1Q8IY67 606 aaKnown RBP16.59■□□□□ 0.25
CPSF4-201ENST00000292476 TMIEQ8NEW7 156 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 GRIN3AQ8TCU5 1115 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 CSGALNACT1Q8TDX6 532 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 FGF14Q92915 247 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 CDRT15Q96T59 188 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 GTSE1Q9NYZ3 720 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 SARDHQ9UL12 918 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 AP1G1O43747 822 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 KAT7O95251 611 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 CLDN7O95471 211 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 JUNP05412 331 aaKnown RBP16.59■□□□□ 0.25
CPSF4-201ENST00000292476 CCDC166P0CW27 439 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 IMPDH1P20839 514 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 CD9P21926 228 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 PEX2P28328 305 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 ELAVL3Q14576 367 aaKnown RBP16.59■□□□□ 0.25
CPSF4-201ENST00000292476 SFT2D3Q587I9 215 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 ERAP2Q6P179 960 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 CRTC1Q6UUV9 634 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 ICA1LQ8NDH6 482 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 NXPE3Q969Y0 559 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 PPP1R16AQ96I34 528 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 PLEKHG4BQ96PX9 1271 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 Q9H521 79 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 KCNK12Q9HB15 430 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 SYTL2Q9HCH5 934 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 BPIFA1Q9NP55 256 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 PKD2L2Q9NZM6 624 aa16.59■□□□□ 0.25
CPSF4-201ENST00000292476 TRIOO75962 3097 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 GLYATL1P3A0A0U1RQE8 302 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 NPIPB15A6NHN6 443 aaPredicted RBP16.58■□□□□ 0.24
CPSF4-201ENST00000292476 EIF4E1BA6NMX2 242 aaKnown RBP16.58■□□□□ 0.24
CPSF4-201ENST00000292476 UPK3BL1B0FP48 263 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 UPK3BL2E5RIL1 263 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 ANHXE9PGG2 379 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 TRIM38O00635 465 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 SRP72O76094 671 aaKnown RBP16.58■□□□□ 0.24
CPSF4-201ENST00000292476 CAPNS1P04632 268 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 PYGLP06737 847 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 PTK2BQ14289 1009 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 TMEM198Q66K66 360 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 UGT3A1Q6NUS8 523 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 SERPINA13PQ6UXR4 307 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 HACD2Q6Y1H2 254 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 TAS2R42Q7RTR8 314 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 CUZD1Q86UP6 607 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 ST13P4Q8IZP2 240 aaPredicted RBP16.58■□□□□ 0.24
CPSF4-201ENST00000292476 ADCY4Q8NFM4 1077 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 LPGAT1Q92604 370 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 PBXIP1Q96AQ6 731 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 VOPP1Q96AW1 172 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 AARSD1Q9BTE6 412 aaKnown RBP16.58■□□□□ 0.24
CPSF4-201ENST00000292476 MRPL1Q9BYD6 325 aaKnown RBP16.58■□□□□ 0.24
CPSF4-201ENST00000292476 TMEM245Q9H330 911 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 TAS2R13Q9NYV9 303 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 THAP10Q9P2Z0 257 aaPredicted RBP16.58■□□□□ 0.24
CPSF4-201ENST00000292476 SUCOQ9UBS9 1254 aaKnown RBP16.58■□□□□ 0.24
CPSF4-201ENST00000292476 CRYL1Q9Y2S2 319 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 DTNAQ9Y4J8 743 aa16.58■□□□□ 0.24
CPSF4-201ENST00000292476 PCDHB1Q9Y5F3 818 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms