RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 IFT88Q13099 833 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 RCN2Q14257 317 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 CSHL1Q14406 222 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 SEMA3AQ14563 771 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 TTLL9Q3SXZ7 439 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 USP39Q53GS9 565 aaKnown RBP13.05□□□□□ -0.32
SLIRP-201ENST00000238688 ZNF789Q5FWF6 425 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 EOGTQ5NDL2 527 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 PSAPL1Q6NUJ1 521 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 C16orf46Q6P387 395 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 TTC23LQ6PF05 361 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 TAS2R42Q7RTR8 314 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 RAB44Q7Z6P3 723 aaPredicted RBP13.05□□□□□ -0.32
SLIRP-201ENST00000238688 PIANPQ8IYJ0 282 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 ZNF513Q8N8E2 541 aaPredicted RBP13.05□□□□□ -0.32
SLIRP-201ENST00000238688 ACVR1CQ8NER5 493 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 NXNL1Q96CM4 212 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 VPS35Q96QK1 796 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 HDAC8Q9BY41 377 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 ILKAPQ9H0C8 392 aaPredicted RBP13.05□□□□□ -0.32
SLIRP-201ENST00000238688 ASB8Q9H765 288 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 ZDHHC3Q9NYG2 299 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 B4GALT6Q9UBX8 382 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 APOBEC2Q9Y235 224 aaKnown RBP13.05□□□□□ -0.32
SLIRP-201ENST00000238688 RAP2CQ9Y3L5 183 aa13.05□□□□□ -0.32
SLIRP-201ENST00000238688 TTC34A8MYJ7 566 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 TK2O00142 265 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 CCL22O00626 93 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 GAPDHSO14556 408 aaPredicted RBP13.04□□□□□ -0.32
SLIRP-201ENST00000238688 BUD23O43709 281 aaKnown RBP13.04□□□□□ -0.32
SLIRP-201ENST00000238688 CCDC22O60826 627 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 KERAO60938 352 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 C7P10643 843 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 ENO3P13929 434 aaPredicted RBP13.04□□□□□ -0.32
SLIRP-201ENST00000238688 CD1DP15813 335 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 GABRG2P18507 467 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 WASP42768 502 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 ABCG1P45844 678 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 RASSF2P50749 326 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 CDKL4Q5MAI5 379 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 KIAA1211LQ6NV74 962 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 SERPINA13PQ6UXR4 307 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 TRMT11Q7Z4G4 463 aaKnown RBP13.04□□□□□ -0.32
SLIRP-201ENST00000238688 ADAMTSL2Q86TH1 951 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 ISCA2Q86U28 154 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 SERPINA9Q86WD7 417 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 ZSWIM9Q86XI8 627 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 TRAM1L1Q8N609 369 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 CHST14Q8NCH0 376 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 CYB5D2Q8WUJ1 264 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 INPP5DQ92835 1189 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 EID2BQ96D98 161 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 L3HYPDHQ96EM0 354 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 NDNQ99608 321 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 COPS8Q99627 209 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 GABRG3Q99928 467 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 MECRQ9BV79 373 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 C12orf65Q9H3J6 166 aaKnown RBP13.04□□□□□ -0.32
SLIRP-201ENST00000238688 RABEP2Q9H5N1 569 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 DYRK4Q9NR20 520 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 SAR1AQ9NR31 198 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 DNAJC28Q9NX36 388 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 PPM1HQ9ULR3 514 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 DHRS7Q9Y394 339 aa13.04□□□□□ -0.32
SLIRP-201ENST00000238688 MAP1BP46821 2468 aaKnown RBP13.03□□□□□ -0.32
SLIRP-201ENST00000238688 TCRBV21S2A2A0A5A6 115 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 C16orf96A6NNT2 1141 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 STX16-NPEPL1H3BU86 382 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 STX16O14662 325 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 FOXD2O60548 495 aaPredicted RBP13.03□□□□□ -0.32
SLIRP-201ENST00000238688 RNASEH1O60930 286 aaKnown RBP13.03□□□□□ -0.32
SLIRP-201ENST00000238688 HSPA4LO95757 839 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 TOP3BO95985 862 aaKnown RBP13.03□□□□□ -0.32
SLIRP-201ENST00000238688 ADH1BP00325 375 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 SLC4A1P02730 911 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 TIMP2P16035 220 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 TFEBP19484 476 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 LHCGRP22888 699 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 DGKAP23743 735 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 NTSR1P30989 418 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 FMO4P31512 558 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 NUMBP49757 651 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 IRX1P78414 480 aaPredicted RBP13.03□□□□□ -0.32
SLIRP-201ENST00000238688 PTSQ03393 145 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 PTPRCAPQ14761 206 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 SMAD1Q15797 465 aaKnown RBP13.03□□□□□ -0.32
SLIRP-201ENST00000238688 ZNF284Q2VY69 593 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 ARSIQ5FYB1 569 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 CFAP157Q5JU67 520 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 C9orf64Q5T6V5 341 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 METTL21CQ5VZV1 264 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 PTRHD1Q6GMV3 140 aaKnown RBP13.03□□□□□ -0.32
SLIRP-201ENST00000238688 FAM151BQ6UXP7 276 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 HMGB4Q8WW32 186 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 C1QTNF3Q9BXJ4 246 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 ZCCHC2Q9C0B9 1178 aaKnown RBP13.03□□□□□ -0.32
SLIRP-201ENST00000238688 FAM83DQ9H4H8 585 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 NPHS2Q9NP85 383 aa13.03□□□□□ -0.32
SLIRP-201ENST00000238688 POLMQ9NP87 494 aaPredicted RBP13.03□□□□□ -0.32
SLIRP-201ENST00000238688 PCDH12Q9NPG4 1184 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms