RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 RALBP11234 206 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 SLC2A4P14672 509 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 VCLP18206 1134 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 SLC19A1P41440 591 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 FASLGP48023 281 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 PDX1P52945 283 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 PRAMEP78395 509 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 MRPS25P82663 173 aaKnown RBP12.45□□□□□ -0.42
LSM5-201ENST00000223084 SARNPP82979 210 aaKnown RBP12.45□□□□□ -0.42
LSM5-201ENST00000223084 CYP4F3Q08477 520 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 PTK6Q13882 451 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 NR1D2Q14995 579 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 CLCA4Q14CN2 919 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.45□□□□□ -0.42
LSM5-201ENST00000223084 XKR5Q6UX68 686 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 LDB1Q86U70 411 aaPredicted RBP12.45□□□□□ -0.42
LSM5-201ENST00000223084 SLC9B2Q86UD5 537 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 CLDN19Q8N6F1 224 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 NAT8LQ8N9F0 302 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 MCUQ8NE86 351 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 OR4L1Q8NH43 312 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 MDM1Q8TC05 714 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 MFSD3Q96ES6 412 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 ATXN7L3BQ96GX2 97 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 ZNF514Q96K75 400 aaPredicted RBP12.45□□□□□ -0.42
LSM5-201ENST00000223084 SERPINB12Q96P63 405 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 SLC38A3Q99624 504 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 TRIM51Q9BSJ1 452 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 KIFC1Q9BW19 673 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 RDH14Q9HBH5 336 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 SARS2Q9NP81 518 aaKnown RBP12.45□□□□□ -0.42
LSM5-201ENST00000223084 TREX1Q9NSU2 369 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 KCNK4Q9NYG8 393 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 CPNE7Q9UBL6 633 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 SOX13Q9UN79 622 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 ENTPD2Q9Y5L3 495 aa12.45□□□□□ -0.42
LSM5-201ENST00000223084 DNMT3AQ9Y6K1 912 aaPredicted RBP12.45□□□□□ -0.42
LSM5-201ENST00000223084 APC2O95996 2303 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 ACACAQ13085 2346 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 KIR2DS5A0A0G2JLQ3 304 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 A0A0G2JNG1 304 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 A0A1W2PNU3 283 aaPredicted RBP12.44□□□□□ -0.42
LSM5-201ENST00000223084 PMS2P1A4D2B8 440 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 OR5K4A6NMS3 321 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 D6RAR5 112 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 KIR2DS3K7RE56 304 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 AP3B1O00203 1094 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 OR1I1O60431 355 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 KCNJ13O60928 360 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 POLBP06746 335 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 PROS1P07225 676 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 CD1CP29017 333 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 GPR3P46089 330 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 PRLHRP49683 370 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 UBE2IP63279 158 aaKnown RBP12.44□□□□□ -0.42
LSM5-201ENST00000223084 DR1Q01658 176 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 CFHR1Q03591 330 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 DMPKQ09013 629 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 KIR2DS5Q14953 304 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 RNASEH2BQ5TBB1 312 aaKnown RBP12.44□□□□□ -0.42
LSM5-201ENST00000223084 CASC4Q6P4E1 433 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 ABRAXAS1Q6UWZ7 409 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 WASH2PQ6VEQ5 465 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 JAMLQ86YT9 394 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 TRIM48Q8IWZ4 208 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 PPIL6Q8IXY8 311 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 CFAP206Q8IYR0 622 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 AGGF1Q8N302 714 aaeCLIP12.44□□□□□ -0.42
LSM5-201ENST00000223084 OR2L2Q8NH16 312 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 WDR48Q8TAF3 677 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 HEXDCQ8WVB3 486 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 SLCO2A1Q92959 643 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.44□□□□□ -0.422e-6■■■■■ 59.4
LSM5-201ENST00000223084 C16orf45Q96MC5 204 aaPredicted RBP12.44□□□□□ -0.42
LSM5-201ENST00000223084 KRT12Q99456 494 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 NUDT22Q9BRQ3 303 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 TBC1D10AQ9BXI6 508 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 MRM3Q9HC36 420 aaKnown RBP12.44□□□□□ -0.42
LSM5-201ENST00000223084 WASH6PQ9NQA3 447 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.44□□□□□ -0.42
LSM5-201ENST00000223084 MARCH4Q9P2E8 410 aaPredicted RBP12.44□□□□□ -0.42
LSM5-201ENST00000223084 RNF14Q9UBS8 474 aa12.44□□□□□ -0.42
LSM5-201ENST00000223084 IGHV1OR21-1A0A087WYE8 117 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 GOLGA8KD6RF30 607 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 GOLGA8TH3BQL2 631 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 DNALI1O14645 258 aaPredicted RBP12.43□□□□□ -0.42
LSM5-201ENST00000223084 TTI1O43156 1089 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 VIPP01282 170 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 CAPNS1P04632 268 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 MPOP05164 745 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 MLNP12872 115 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 HOXB3P14651 431 aaPredicted RBP12.43□□□□□ -0.42
LSM5-201ENST00000223084 XRCC1P18887 633 aaPredicted RBP12.43□□□□□ -0.42
LSM5-201ENST00000223084 MPSTP25325 297 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 IVDP26440 423 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 ARNTP27540 789 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 CSF2RBP32927 897 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 MAPK9P45984 424 aa12.43□□□□□ -0.42
LSM5-201ENST00000223084 PPM1FP49593 454 aaPredicted RBP12.43□□□□□ -0.42
LSM5-201ENST00000223084 C2orf54Q08AI8 447 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms