RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 HACD3Q9P035 362 aa12.57□□□□□ -0.4
CDK5RAP3-217ENST00000580287 THAP10Q9P2Z0 257 aaPredicted RBP12.57□□□□□ -0.4
CDK5RAP3-217ENST00000580287 GALPQ9UBC7 116 aa12.57□□□□□ -0.4
CDK5RAP3-217ENST00000580287 FAM50BQ9Y247 325 aa12.57□□□□□ -0.4
CDK5RAP3-217ENST00000580287 FIS1Q9Y3D6 152 aa12.57□□□□□ -0.4
CDK5RAP3-217ENST00000580287 STON1Q9Y6Q2 735 aa12.57□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TCF20Q9UGU0 1960 aaKnown RBP12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CXorf51AA0A1B0GTR3 108 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 NEMP2A6NFY4 417 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 KLHL2O95198 593 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 EGFP01133 1207 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 FOSL2P15408 326 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RPS6KA3P51812 740 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 STC1P52823 247 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RPL26P61254 145 aaKnown RBP12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TBCCQ15814 346 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TCHHL1Q5QJ38 904 aaPredicted RBP12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 FAM91A1Q658Y4 838 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MRNIPQ6NTE8 343 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 KIAA1211LQ6NV74 962 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 Q6ZVL8 140 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 HSD11B1LQ7Z5J1 315 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 DEFB123Q8N688 67 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ZFAND2BQ8WV99 257 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PBXIP1Q96AQ6 731 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ARRDC3Q96B67 414 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 STN1Q9H668 368 aaKnown RBP12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 LRCH1Q9Y2L9 728 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 COQ6Q9Y2Z9 468 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PIAS3Q9Y6X2 628 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ZBTB14O43829 449 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 DLX3O60479 287 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 H2AFYO75367 372 aaKnown RBP12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SRP72O76094 671 aaKnown RBP12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 C1SP09871 688 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CPOXP36551 454 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ETV3P41162 512 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 POU4F1Q01851 419 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 LAMB3Q13751 1172 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 HECTD2Q5U5R9 776 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 FOXB2Q5VYV0 432 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 NXNQ6DKJ4 435 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 AFTPHQ6ULP2 937 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TMEM207Q6UWW9 146 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CLDN19Q8N6F1 224 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RDH11Q8TC12 318 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ANKRD49Q8WVL7 239 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MARK4Q96L34 752 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 OR52B2Q96RD2 323 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MCCC1Q96RQ3 725 aaPredicted RBP12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 NUF2Q9BZD4 464 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MRPL46Q9H2W6 279 aaKnown RBP12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 VCXQ9H320 206 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ASB8Q9H765 288 aa12.56□□□□□ -0.4
CDK5RAP3-217ENST00000580287 A0A088AWK7 358 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 EDDM13A0A1B0GTR0 161 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ZNF195O14628 629 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 JUNP05412 331 aaKnown RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 CCDC166P0CW27 439 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 COL6A2P12110 1019 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 XPAP23025 273 aaPredicted RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 EPHA3P29320 983 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PSMD8P48556 350 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TIAL1Q01085 375 aaKnown RBP eCLIP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SLC34A1Q06495 639 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 BRAT1Q6PJG6 821 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SDCCAG8Q86SQ7 713 aaPredicted RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PLPP6Q8IY26 295 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TMEM151AQ8N4L1 468 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 OR6Y1Q8NGX8 325 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PEX13Q92968 403 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TSR3Q9UJK0 312 aaKnown RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 VWA7Q9Y334 891 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PPIL1Q9Y3C6 166 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SLC30A1Q9Y6M5 507 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MTX2O75431 263 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 NDUFS3O75489 264 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 IL9P15248 144 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 KIR2DL1P43626 348 aaPredicted RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RPL14P50914 215 aaKnown RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ATXN3P54252 364 aaPredicted RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 POLR2LP62875 67 aaKnown RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SMAD4Q13485 552 aaKnown RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ELAVL3Q14576 367 aaKnown RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 PDCD2Q16342 344 aaPredicted RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 FAM83EQ2M2I3 478 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 SEL1L3Q68CR1 1132 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 ISLR2Q6UXK2 745 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 KIAA0408Q6ZU52 694 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 FRMD7Q6ZUT3 714 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RPS27LQ71UM5 84 aaKnown RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 OR8D1Q8WZ84 308 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 HLA-CQ95604 372 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 LYSMD1Q96S90 227 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 DRC3Q9H069 523 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 TCF7L2Q9NQB0 619 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 MBD1Q9UIS9 605 aaPredicted RBP12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 RIMKLBQ9ULI2 386 aa12.55□□□□□ -0.4
CDK5RAP3-217ENST00000580287 A0A087X1B8 175 aa12.54□□□□□ -0.4
CDK5RAP3-217ENST00000580287 UPK3BL1B0FP48 263 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms