RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 NUAK1O60285 661 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 NIPSNAP2O75323 286 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 SAT1P21673 171 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 SLC26A3P40879 764 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 CCNFP41002 786 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 CSRP3P50461 194 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 THOP1P52888 689 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 CDKN2DP55273 166 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 CLDN2P57739 230 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 RACK1P63244 317 aaKnown RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 SLC18A2Q05940 514 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 OVGP1Q12889 678 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 PDAP1Q13442 181 aaKnown RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 PTK2BQ14289 1009 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 TTMPQ5BVD1 217 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 ZNF648Q5T619 568 aaPredicted RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 TMEM220Q6QAJ8 160 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 RAPH1Q70E73 1250 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 TRIM74Q86UV6 250 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 EXOC3L1Q86VI1 746 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 LCA5Q86VQ0 697 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 IQCHQ86VS3 1027 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 DCP2Q8IU60 420 aaKnown RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 SRRM1Q8IYB3 904 aaKnown RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 MFSD2AQ8NA29 543 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 ACVR1CQ8NER5 493 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 DNASE2BQ8WZ79 361 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 ZBTB9Q96C00 473 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 SGF29Q96ES7 293 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 LINC00615Q96LM1 132 aaPredicted RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 WDR92Q96MX6 357 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 LGR4Q9BXB1 951 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 CAB39LQ9H9S4 337 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 SSU72Q9NP77 194 aaKnown RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 SPATS2LQ9NUQ6 558 aaKnown RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 TRMT6Q9UJA5 497 aaKnown RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 SLC17A4Q9Y2C5 497 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 MED16Q9Y2X0 877 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 DNMT3AQ9Y6K1 912 aaPredicted RBP10.59□□□□□ -0.71
SS18-213ENST00000579640 A0A0C4DFX4 3053 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 CEP192Q8TEP8 1941 aa10.59□□□□□ -0.71
SS18-213ENST00000579640 KMT2EQ8IZD2 1858 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 A0A096LPK6 155 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 PRR33A8MZF0 331 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 TNFRSF10CO14798 259 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 CHUKO15111 745 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 SGTAO43765 313 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 GPR37L1O60883 481 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 TRIM16O95361 564 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 C2P06681 752 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 COL6A2P12110 1019 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 ZNF8P17098 575 aaPredicted RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 KRT4P19013 534 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 CTSCP53634 463 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 MAGOHP61326 146 aaKnown RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 TTLL9Q3SXZ7 439 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 PMS2CLQ68D20 193 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 KCTD16Q68DU8 428 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 DOK6Q6PKX4 331 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 Q6ZSR6 202 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 SH2D5Q6ZV89 423 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 DET1Q7L5Y6 550 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 CMC1Q7Z7K0 106 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 LRRTM4Q86VH4 590 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 CEP97Q8IW35 865 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 TMEFF1Q8IYR6 380 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 INPP5DQ92835 1189 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 GPR21Q99679 349 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 CCM2Q9BSQ5 444 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 GPAMQ9HCL2 828 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 AASDHPPTQ9NRN7 309 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 GPR27Q9NS67 375 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 MKS1Q9NXB0 559 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 EIF2B4Q9UI10 523 aaKnown RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 CA5BQ9Y2D0 317 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 TMEM98Q9Y2Y6 226 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 ACOT9Q9Y305 439 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 DHRS7Q9Y394 339 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 PIKFYVEQ9Y2I7 2098 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 C17orf113A0A1B0GUU1 675 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 OR2AG2A6NM03 316 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 H0Y8X5 98 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 EIF3FO00303 357 aaPredicted RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 KMOO15229 486 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 PHGDHO43175 533 aaKnown RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 KCNJ13O60928 360 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 LILRB5O75023 590 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 WISP3O95389 354 aaPredicted RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 GSTA1P08263 222 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 SP9P0CG40 484 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 SLC35E2BP0CK96 405 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 PYGBP11216 843 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 CD38P28907 300 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 CCT5P48643 541 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 CLCN7P51798 805 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 TIAL1Q01085 375 aaKnown RBP eCLIP10.58□□□□□ -0.72
SS18-213ENST00000579640 PDE1CQ14123 709 aaPredicted RBP10.58□□□□□ -0.72
SS18-213ENST00000579640 ANGPT1Q15389 498 aa10.58□□□□□ -0.72
SS18-213ENST00000579640 LRRC8EQ6NSJ5 796 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms