RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 DCAF4L2Q8NA75 395 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 OR2T11Q8NH01 316 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 CANT1Q8WVQ1 401 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 MYO19Q96H55 970 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 TEX37Q96LM6 180 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 CCM2LQ9NUG4 571 aaPredicted RBP9.96□□□□□ -0.81
VPS53-220ENST00000576149 PCDHA9Q9Y5H5 950 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 ASPDHA6ND91 283 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 GOLGA8CPA6NN73 597 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 ZNF839A8K0R7 811 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 K7ERQ8 282 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 KIF3CO14782 793 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 OR4F21O95013 312 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 TNFAIP8O95379 198 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 KCNK10P57789 538 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 ERVK-8P63133 956 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 MYBPC1Q00872 1141 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 PCBP2Q15366 365 aaKnown RBP eCLIP9.96□□□□□ -0.825e-9■■■■■ 51.4
VPS53-220ENST00000576149 NRF1Q16656 503 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 CNPY1Q3B7I2 92 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 PDCD4Q53EL6 469 aaKnown RBP9.96□□□□□ -0.82
VPS53-220ENST00000576149 LCN8Q6JVE9 175 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 SCIMPQ6UWF3 145 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 AMIGO2Q86SJ2 522 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 CAMK1DQ8IU85 385 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 GALNT15Q8N3T1 639 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 ARL14EPQ8N8R7 260 aaPredicted RBP9.96□□□□□ -0.82
VPS53-220ENST00000576149 SPDYE1Q8NFV5 336 aaPredicted RBP9.96□□□□□ -0.82
VPS53-220ENST00000576149 OR52B6Q8NGF0 335 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 GRIN3AQ8TCU5 1115 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 SLC45A3Q96JT2 553 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 TRIM54Q9BYV2 358 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 TRIM15Q9C019 465 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 ZNF696Q9H7X3 374 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 NOL11Q9H8H0 719 aaKnown RBP9.96□□□□□ -0.82
VPS53-220ENST00000576149 RIC8BQ9NVN3 520 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 LZTS1Q9Y250 596 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 ST14Q9Y5Y6 855 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 AK5Q9Y6K8 562 aa9.96□□□□□ -0.82
VPS53-220ENST00000576149 SMIM31A0A1B0GVY4 71 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 GAPDHSO14556 408 aaPredicted RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 EEDO75530 441 aaKnown RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 SLC22A3O75751 556 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 OLFM2O95897 454 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 FAM58BPP0C7Q3 252 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 BMP2P12643 396 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 RPS3P23396 243 aaKnown RBP eCLIP9.95□□□□□ -0.82
VPS53-220ENST00000576149 EPHB3P54753 998 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 POLE2P56282 527 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ERVPABLB-1P60509 514 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 UFM1P61960 85 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 CREB5Q02930 508 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 C6orf136Q5SQH8 315 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 SPOUT1Q5T280 376 aaKnown RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 THEMIS2Q5TEJ8 643 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 C16orf87Q6PH81 154 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 SBSNQ6UWP8 590 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 Q6ZSR9 355 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ERMP1Q7Z2K6 904 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ADAMTSL2Q86TH1 951 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 FAM217AQ8IXS0 508 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 TCEAL8Q8IYN2 117 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 APCDD1Q8J025 514 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 SLC39A11Q8N1S5 342 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 CDYL2Q8N8U2 506 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ANKFN1Q8N957 763 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 GOLM1Q8NBJ4 401 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 NCSTNQ92542 709 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 TMEM125Q96AQ2 219 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 VPS33AQ96AX1 596 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 TMEM169Q96HH4 297 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 SLC29A1Q99808 456 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 C19orf43Q9BQ61 176 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 C2orf49Q9BVC5 232 aaPredicted RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 HERC2P3Q9BVR0 1158 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 TM6SF2Q9BZW4 377 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 EPB41L1Q9H4G0 881 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 IL21Q9HBE4 155 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ZNF334Q9HCZ1 680 aaPredicted RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 TMEM45AQ9NWC5 275 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 PLK2Q9NYY3 685 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ZIM2Q9NZV7 527 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 NDUFA13Q9P0J0 144 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ACTR3BQ9P1U1 418 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 TNPO3Q9Y5L0 923 aaKnown RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 CPQQ9Y646 472 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ANAPC1Q9H1A4 1944 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 TANC1Q9C0D5 1861 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 COL4A6Q14031 1691 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 SMAD6O43541 496 aaKnown RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 TIPRLO75663 272 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 PGM3O95394 542 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 PRAMEF1O95521 474 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 TFAP2AP05549 437 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 ZNF7P17097 686 aaPredicted RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 GSTT1P30711 240 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 RPL5P46777 297 aaKnown RBP9.95□□□□□ -0.82
VPS53-220ENST00000576149 PRMT2P55345 433 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 NFYCQ13952 458 aa9.95□□□□□ -0.82
VPS53-220ENST00000576149 PAGE3Q5JUK9 113 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms