RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 THRAP10827 490 aa19.97■□□□□ 0.79
CLK3-225ENST00000569063 VCLP18206 1134 aa19.97■□□□□ 0.79
CLK3-225ENST00000569063 ITIH1P19827 911 aa19.97■□□□□ 0.79
CLK3-225ENST00000569063 STIP1P31948 543 aaKnown RBP19.97■□□□□ 0.79
CLK3-225ENST00000569063 UCNP55089 124 aa19.97■□□□□ 0.79
CLK3-225ENST00000569063 AGAP9Q5VTM2 703 aa19.97■□□□□ 0.79
CLK3-225ENST00000569063 SLC13A5Q86YT5 568 aaPredicted RBP19.97■□□□□ 0.79
CLK3-225ENST00000569063 RCBTB1Q8NDN9 531 aa19.97■□□□□ 0.79
CLK3-225ENST00000569063 LRRC40Q9H9A6 602 aa19.97■□□□□ 0.79
CLK3-225ENST00000569063 ZNF624Q9P2J8 865 aaPredicted RBP19.97■□□□□ 0.79
CLK3-225ENST00000569063 DNMT3AQ9Y6K1 912 aaPredicted RBP19.97■□□□□ 0.79
CLK3-225ENST00000569063 AGAP14A8MT82 685 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 PSMD3O43242 534 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 LDB2O43679 373 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 LIASO43766 372 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 BRAFP15056 766 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 IDSP22304 550 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 ETV5P41161 510 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 ZNF140P52738 457 aaPredicted RBP19.96■□□□□ 0.79
CLK3-225ENST00000569063 XIAPP98170 497 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 DMPKQ09013 629 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 RPS6KA1Q15418 735 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 OASLQ15646 514 aaKnown RBP19.96■□□□□ 0.79
CLK3-225ENST00000569063 JAMLQ86YT9 394 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 ATG4AQ8WYN0 398 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 FCRL3Q96P31 734 aaPredicted RBP19.96■□□□□ 0.79
CLK3-225ENST00000569063 EPB41L1Q9H4G0 881 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 ASB8Q9H765 288 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 TMEM9Q9P0T7 183 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 FKBPLQ9UIM3 349 aa19.96■□□□□ 0.79
CLK3-225ENST00000569063 ZNF106Q9H2Y7 1883 aaKnown RBP19.96■□□□□ 0.79
CLK3-225ENST00000569063 LILRA5A6NI73 299 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 PDZK1P1A8MUH7 402 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 POP7O75817 140 aaKnown RBP19.95■□□□□ 0.78
CLK3-225ENST00000569063 AP2A1O95782 977 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 HADHAP40939 763 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 SLC19A1P41440 591 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 CTSCP53634 463 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 TMPRSS3P57727 454 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 TMEM220Q6QAJ8 160 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 AMZ2Q86W34 360 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 OR13C4Q8NGS5 318 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 USP7Q93009 1102 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 ZNF514Q96K75 400 aaPredicted RBP19.95■□□□□ 0.78
CLK3-225ENST00000569063 ALS2CR12Q96Q35 445 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 LZTFL1Q9NQ48 299 aa19.95■□□□□ 0.78
CLK3-225ENST00000569063 FAM208BQ5VWN6 2430 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 PRAMEF33A0A0G2JMD5 474 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 C9orf172C9J069 976 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 AGRPO00253 132 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 PRAMEF10O60809 474 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 VIPP01282 170 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 CCL4P13236 92 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 MSH3P20585 1137 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 MPSTP25325 297 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 RPL10P27635 214 aaKnown RBP19.94■□□□□ 0.78
CLK3-225ENST00000569063 CCZ1BP86790 482 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 CCZ1P86791 482 aaPredicted RBP19.94■□□□□ 0.78
CLK3-225ENST00000569063 CLN3Q13286 438 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 SEPT7Q16181 437 aaKnown RBP19.94■□□□□ 0.78
CLK3-225ENST00000569063 LONRF2Q1L5Z9 754 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 TMEM26Q6ZUK4 368 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 AGBL5Q8NDL9 886 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 NCSTNQ92542 709 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 TBC1D10AQ9BXI6 508 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 POT1Q9NUX5 634 aa19.94■□□□□ 0.78
CLK3-225ENST00000569063 LOC400499M0QZD8 3231 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 OR2AG2A6NM03 316 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 FGF3P11487 239 aaPredicted RBP19.93■□□□□ 0.78
CLK3-225ENST00000569063 AKT1P31749 480 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 CSTF2P33240 577 aaKnown RBP eCLIP19.93■□□□□ 0.78
CLK3-225ENST00000569063 PPM1FP49593 454 aaPredicted RBP19.93■□□□□ 0.78
CLK3-225ENST00000569063 MAPK10P53779 464 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 DRG2P55039 364 aaKnown RBP19.93■□□□□ 0.78
CLK3-225ENST00000569063 CXADRP78310 365 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 CLCA4Q14CN2 919 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 TMEM164Q5U3C3 297 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 GPR155Q7Z3F1 870 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 TRIM48Q8IWZ4 208 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 RBM12BQ8IXT5 1001 aaKnown RBP19.93■□□□□ 0.78
CLK3-225ENST00000569063 ULK4Q96C45 1275 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 ZMYND15Q9H091 742 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 SLC40A1Q9NP59 571 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.93■□□□□ 0.78
CLK3-225ENST00000569063 WDR37Q9Y2I8 494 aa19.93■□□□□ 0.78
CLK3-225ENST00000569063 KLHL33A6NCF5 533 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 OR52A4PA6NMU1 304 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 ERI2A8K979 691 aaKnown RBP19.92■□□□□ 0.78
CLK3-225ENST00000569063 H7C0S8 307 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 TPH1P17752 444 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 TMPRSS15P98073 1019 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 GPR33Q49SQ1 333 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 FNBP1LQ5T0N5 605 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 METRNLQ641Q3 311 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 ARHGAP22Q7Z5H3 698 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 SNX20Q7Z614 316 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 LINC00523Q86TU6 105 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 SNRNP27Q8WVK2 155 aaKnown RBP19.92■□□□□ 0.78
CLK3-225ENST00000569063 C1orf54Q8WWF1 131 aa19.92■□□□□ 0.78
CLK3-225ENST00000569063 SGF29Q96ES7 293 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms