RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 CFAP99D6REC4 459 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 SMAPO00193 183 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 CD3EAPO15446 510 aaKnown RBP17.23■□□□□ 0.35
SHMT2-225ENST00000556798 TNFSF14O43557 240 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 SGTAO43765 313 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 RALBP11234 206 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 ZNF7P17097 686 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-225ENST00000556798 DEKP35659 375 aaKnown RBP17.23■□□□□ 0.35
SHMT2-225ENST00000556798 ARL4CP56559 192 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 ARMC3Q5W041 872 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 KIAA0930Q6ICG6 404 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-225ENST00000556798 LVRNQ6Q4G3 990 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 C11orf96Q7Z7L8 435 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 IGDCC3Q8IVU1 814 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 CEP112Q8N8E3 955 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 FAM181AQ8N9Y4 354 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 WDR83Q9BRX9 315 aaKnown RBP17.23■□□□□ 0.35
SHMT2-225ENST00000556798 OSGEPL1Q9H4B0 414 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 TOR4AQ9NXH8 423 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 CHMP2BQ9UQN3 213 aa17.23■□□□□ 0.35
SHMT2-225ENST00000556798 SPEGQ15772 3267 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 ZCWPW2A0A1B0GU75 182 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 MAGEB16A2A368 324 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 ESPNB1AK53 854 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 NDC80O14777 642 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 ZNF500O60304 480 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-225ENST00000556798 OR1I1O60431 355 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 SNX2O60749 519 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 USP1O94782 785 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 EML2O95834 649 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 ATP1B2P14415 290 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-225ENST00000556798 PGAM1P18669 254 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 PAMP19021 973 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 ELK3P41970 407 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 ARCN1P48444 511 aaKnown RBP17.22■□□□□ 0.35
SHMT2-225ENST00000556798 DNTTIP2Q5QJE6 756 aaKnown RBP17.22■□□□□ 0.35
SHMT2-225ENST00000556798 DGLUCYQ7Z3D6 616 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 TMEM135Q86UB9 458 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 CLDN19Q8N6F1 224 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 ARL10Q8N8L6 244 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 LRRN4CLQ8ND94 238 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 ZDHHC1Q8WTX9 485 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 PATE1Q8WXA2 126 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 CFAP36Q96G28 342 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 SGSM3Q96HU1 749 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 EBNA1BP2Q99848 306 aaKnown RBP17.22■□□□□ 0.35
SHMT2-225ENST00000556798 TIMM29Q9BSF4 260 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 FAM8A1Q9UBU6 413 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 TBC1D29Q9UFV1 150 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 PRSS21Q9Y6M0 314 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 PTPRBP23467 1997 aa17.22■□□□□ 0.35
SHMT2-225ENST00000556798 NOBOXO60393 691 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 POP7O75817 140 aaKnown RBP17.21■□□□□ 0.35
SHMT2-225ENST00000556798 F7P08709 466 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-225ENST00000556798 FTH1P19P0C7X4 201 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 CKMT1AP12532 417 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 CKMT2P17540 419 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 ACADVLP49748 655 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 PLTPP55058 493 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 GUCY2DQ02846 1103 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 PDIA2Q13087 525 aaKnown RBP17.21■□□□□ 0.35
SHMT2-225ENST00000556798 ITIH4Q14624 930 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 CRYMQ14894 314 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 FASTKD3Q14CZ7 662 aaKnown RBP17.21■□□□□ 0.35
SHMT2-225ENST00000556798 NR0B2Q15466 257 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 SEPT7Q16181 437 aaKnown RBP17.21■□□□□ 0.35
SHMT2-225ENST00000556798 BCL7AQ4VC05 210 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 AARS2Q5JTZ9 985 aaKnown RBP17.21■□□□□ 0.35
SHMT2-225ENST00000556798 GUSBP11Q6P575 273 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 GLRX5Q86SX6 157 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 ANKMY2Q8IV38 441 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 UNC5BQ8IZJ1 945 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 HEXDCQ8WVB3 486 aa17.21■□□□□ 0.35
SHMT2-225ENST00000556798 CPED1A4D0V7 1026 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 POLBP06746 335 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 NSG1P42857 185 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 PRLHRP49683 370 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 MAZP56270 477 aaKnown RBP17.2■□□□□ 0.34
SHMT2-225ENST00000556798 LYPLAL1Q5VWZ2 237 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 OGFOD3Q6PK18 319 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 ZDHHC24Q6UX98 284 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 PACS1Q6VY07 963 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 CERS6Q6ZMG9 384 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 FAM83HQ6ZRV2 1179 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-225ENST00000556798 SLCO6A1Q86UG4 719 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 AMZ2Q86W34 360 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 NAGSQ8N159 534 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.2■□□□□ 0.34
SHMT2-225ENST00000556798 GPR156Q8NFN8 814 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 FBXO25Q8TCJ0 367 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 GLMNQ92990 594 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 ART4Q93070 314 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 ZNF514Q96K75 400 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-225ENST00000556798 PRDM8Q9NQV8 689 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 C20orf96Q9NUD7 363 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-225ENST00000556798 ZC3H7BQ9UGR2 993 aaKnown RBP17.2■□□□□ 0.34
SHMT2-225ENST00000556798 DMGDHQ9UI17 866 aaKnown RBP17.2■□□□□ 0.34
SHMT2-225ENST00000556798 TEX264Q9Y6I9 313 aa17.2■□□□□ 0.34
SHMT2-225ENST00000556798 TRBV23OR9-2A0A075B6M9 112 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 E7ESA3 106 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms