RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CACHD1Q5VU97 1274 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 PWWP2BQ6NUJ5 590 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 FAM199XQ6PEV8 388 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 ABRAXAS1Q6UWZ7 409 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 LUZP1Q86V48 1076 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 FAM26EQ8N5C1 309 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 KLHL6Q8WZ60 621 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 ADGRE3Q9BY15 652 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 UBP1Q9NZI7 540 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 CAPN11Q9UMQ6 739 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 SHANK1Q9Y566 2161 aa15.18■□□□□ 0.02
CLSTN3-213ENST00000541953 F5H423 210 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 NELFEP18615 380 aaKnown RBP15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 PMS2P54278 862 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 ZBED6P86452 979 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 SEPT6Q14141 434 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 SLC9A4Q6AI14 798 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 TCTN3Q6NUS6 607 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 CAVIN1Q6NZI2 390 aaKnown RBP15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 ASB18Q6ZVZ8 466 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 GPR63Q9BZJ6 419 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 TWSG1Q9GZX9 223 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 ACTL8Q9H568 366 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 CBX8Q9HC52 389 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 MAGEE1Q9HCI5 957 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 LHX9Q9NQ69 397 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 POT1Q9NUX5 634 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 POLHQ9Y253 713 aa15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 BZW2Q9Y6E2 419 aaKnown RBP15.17■□□□□ 0.02
CLSTN3-213ENST00000541953 PIPSLA2A3N6 862 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 LRRD1A4D1F6 860 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 GPR89AB7ZAQ6 455 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 TOX3O15405 576 aaPredicted RBP15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 DDX3YO15523 660 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 PMPCBO75439 489 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 CREG1O75629 220 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 RFPL1O75677 317 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 CDK14O94921 469 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 NTRK1P04629 796 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 EBLN1P0CF75 366 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 GPR89BP0CG08 455 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 CD68P34810 354 aaPredicted RBP15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 CHRNA4P43681 627 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 CDK18Q07002 472 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 IL10RAQ13651 578 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 IL11RAQ14626 422 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 AGAP9Q5VTM2 703 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 FAM69BQ5VUD6 431 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 PDPK2PQ6A1A2 396 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 DUS1LQ6P1R4 473 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 NT5DC3Q86UY8 548 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 TRAPPC5Q8IUR0 188 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 TTC30BQ8N4P2 665 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 AVL9Q8NBF6 648 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 PPM1MQ96MI6 270 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 SLC25A51Q9H1U9 297 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 SAE1Q9UBE0 346 aaPredicted RBP15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 PSMD13Q9UNM6 376 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 HYOU1Q9Y4L1 999 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 PCDHGA6Q9Y5G7 932 aa15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 CFAP20Q9Y6A4 193 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-213ENST00000541953 MKRN2OSH3BPM6 223 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 GAPDHSO14556 408 aaPredicted RBP15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 BUD23O43709 281 aaKnown RBP15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 UGT1A9O60656 530 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 UGT1A6P19224 532 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 UGT1A1P22309 533 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 UGT1A4P22310 534 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 PTPN3P26045 913 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 CASP14P31944 242 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 DYNLT1P63172 113 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 TMEM115Q12893 351 aaPredicted RBP15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 TUBB3Q13509 450 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 MESDQ14696 234 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 PTPRCAPQ14761 206 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 LLGL1Q15334 1064 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 ASTE1Q2TB18 679 aaPredicted RBP15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 ZFYVE27Q5T4F4 411 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 PRAMEF17Q5VTA0 474 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 FBXO38Q6PIJ6 1188 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 WASH2PQ6VEQ5 465 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 MICALCLQ6ZW33 695 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 PPP1R3BQ86XI6 285 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 MAP7D3Q8IWC1 876 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 RASGEF1AQ8N9B8 481 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 TEX19Q8NA77 164 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 CXorf40BQ96DE9 158 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 SLC41A2Q96JW4 573 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 VPS35Q96QK1 796 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 NRTNQ99748 197 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 MAP3K3Q99759 626 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 UGT1A7Q9HAW7 530 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 UGT1A10Q9HAW8 530 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 UGT1A8Q9HAW9 530 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 GLOD4Q9HC38 313 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 WASH6PQ9NQA3 447 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 SEMA5BQ9P283 1151 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 UVRAGQ9P2Y5 699 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 EPHA6Q9UF33 1036 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms