RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NR2C2APQ86WQ0 139 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 ANKRD52Q8NB46 1076 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 LMO3Q8TAP4 145 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 PPP1R10Q96QC0 940 aaKnown RBP3.98□□□□□ -1.77
CD44-235ENST00000532339 KLHL31Q9H511 634 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 RPAP3Q9H6T3 665 aaPredicted RBP3.98□□□□□ -1.77
CD44-235ENST00000532339 BABAM1Q9NWV8 329 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 ZDHHC7Q9NXF8 308 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 SLC25A13Q9UJS0 675 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 RAP2CQ9Y3L5 183 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 TLN1Q9Y490 2541 aaKnown RBP3.98□□□□□ -1.77
CD44-235ENST00000532339 ATAD5Q96QE3 1844 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 A0A087WV48 116 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.97□□□□□ -1.77
CD44-235ENST00000532339 A6NCN8 305 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 TMEM247A6NEH6 219 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 PGPEP1LA6NFU8 196 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 NPIPB13A6NJU9 1138 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 FAM90A7PA6NKC0 464 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 NPIPB5A8MRT5 1133 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 FAM90A22PA8MWA6 464 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 FAM90A12PA8MX19 464 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 FAM90A23PA8MXZ1 464 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 BTBD18B2RXH4 712 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 NPIPB4C9JG80 1138 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 H0Y626 953 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 PER2O15055 1255 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 TRIM16O95361 564 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 MMP3P08254 477 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 MYZAPP0CAP1 466 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 PRPH2P23942 346 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 ELAVL4P26378 380 aaKnown RBP3.97□□□□□ -1.77
CD44-235ENST00000532339 AVPR1AP37288 418 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 CDK18Q07002 472 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 TBL3Q12788 808 aaKnown RBP3.97□□□□□ -1.77
CD44-235ENST00000532339 NONOQ15233 471 aaKnown RBP eCLIP3.97□□□□□ -1.77
CD44-235ENST00000532339 SF3A2Q15428 464 aaKnown RBP3.97□□□□□ -1.77
CD44-235ENST00000532339 C5orf22Q49AR2 442 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 TDRD12Q587J7 1177 aaKnown RBP3.97□□□□□ -1.77
CD44-235ENST00000532339 SLC45A4Q5BKX6 768 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 NAA35Q5VZE5 725 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 TSSK4Q6SA08 328 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 Q6ZSV7 163 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 CHD1LQ86WJ1 897 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 ARMC8Q8IUR7 673 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 ADAMTS14Q8WXS8 1223 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 DNASE2BQ8WZ79 361 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 ELP4Q96EB1 424 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 APOPT1Q96IL0 206 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 KLHL5Q96PQ7 755 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 IFIH1Q9BYX4 1025 aaKnown RBP3.97□□□□□ -1.77
CD44-235ENST00000532339 PANK3Q9H999 370 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 Q9N2J8 555 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 PRMT8Q9NR22 394 aaPredicted RBP3.97□□□□□ -1.77
CD44-235ENST00000532339 ORC3Q9UBD5 711 aaPredicted RBP3.97□□□□□ -1.77
CD44-235ENST00000532339 Q9Y3F1 56 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 MYH3P11055 1940 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 MICAL3Q7RTP6 2002 aa3.97□□□□□ -1.77
CD44-235ENST00000532339 ADGRA3Q8IWK6 1321 aa3.96□□□□□ -1.77
CD44-235ENST00000532339 NLRC5Q86WI3 1866 aa3.96□□□□□ -1.77
CD44-235ENST00000532339 DYTNA2CJ06 578 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 SH2D7A6NKC9 451 aaPredicted RBP3.96□□□□□ -1.78
CD44-235ENST00000532339 ASAP2O43150 1006 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 ANP32CO43423 234 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 TMCC1O94876 653 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 WEE2P0C1S8 567 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 FCGR1AP12314 374 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 UNGP13051 313 aaPredicted RBP3.96□□□□□ -1.78
CD44-235ENST00000532339 TNNT1P13805 278 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 RDXP35241 583 aaKnown RBP3.96□□□□□ -1.78
CD44-235ENST00000532339 COPB2P35606 906 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 CCR9P51686 369 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 MVDP53602 400 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 PMS2P54278 862 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 TMPRSS3P57727 454 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 STARD6P59095 220 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 RPP30P78346 268 aaKnown RBP3.96□□□□□ -1.78
CD44-235ENST00000532339 GCKRQ14397 625 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 KRT32Q14532 448 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 NFIL3Q16649 462 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 KRTAP5-11Q6L8G4 156 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 HEPHL1Q6MZM0 1159 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 TMEM71Q6P5X7 295 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 DCLRE1AQ6PJP8 1040 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 CREB3L2Q70SY1 520 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 R3HCC1LQ7Z5L2 792 aaKnown RBP3.96□□□□□ -1.78
CD44-235ENST00000532339 CUZD1Q86UP6 607 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 HORMAD2Q8N7B1 307 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 RNFT2Q96EX2 444 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 APOLD1Q96LR9 279 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 BARD1Q99728 777 aaKnown RBP3.96□□□□□ -1.78
CD44-235ENST00000532339 TREX2Q9BQ50 279 aaPredicted RBP3.96□□□□□ -1.78
CD44-235ENST00000532339 MTG1Q9BT17 334 aaPredicted RBP3.96□□□□□ -1.78
CD44-235ENST00000532339 HDHD5Q9BXW7 423 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 CTDSP1Q9GZU7 261 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 PLEKHA5Q9HAU0 1116 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 PLSCR4Q9NRQ2 329 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 THAP1Q9NVV9 213 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 TMEM248Q9NWD8 314 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 IL36RNQ9UBH0 155 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms