RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 KIR2DS5Q14953 304 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 TMEM220Q6QAJ8 160 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 LRRC69Q6ZNQ3 347 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 DET1Q7L5Y6 550 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 DNAJC1Q96KC8 554 aaKnown RBP24.28■■□□□ 1.48
UPF3A-209ENST00000492270 CCDC74BQ96LY2 380 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 ZCCHC2Q9C0B9 1178 aaKnown RBP24.28■■□□□ 1.48
UPF3A-209ENST00000492270 FAM96AQ9H5X1 160 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 STN1Q9H668 368 aaKnown RBP24.28■■□□□ 1.48
UPF3A-209ENST00000492270 ETNK1Q9HBU6 452 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 CPNE7Q9UBL6 633 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 PISDQ9UG56 409 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 ITGA2BP08514 1039 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 CXCR5P32302 372 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 ETV5P41161 510 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 PPM1FP49593 454 aaPredicted RBP24.27■■□□□ 1.48
UPF3A-209ENST00000492270 PDE1BQ01064 536 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 SEPT6Q14141 434 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 CLEC14AQ86T13 490 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 BEND7Q8N7W2 519 aaPredicted RBP24.27■■□□□ 1.48
UPF3A-209ENST00000492270 ZNF248Q8NDW4 579 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 OR52K1Q8NGK4 314 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 ZMYND15Q9H091 742 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 ZNF624Q9P2J8 865 aaPredicted RBP24.27■■□□□ 1.48
UPF3A-209ENST00000492270 PTPRQQ9UMZ3 2332 aa24.27■■□□□ 1.48
UPF3A-209ENST00000492270 CCDC78A2IDD5 438 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 OR5K4A6NMS3 321 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 PSMD3O43242 534 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 FGGP02679 453 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 JMJD7P0C870 316 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 MSH3P20585 1137 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 PBLDP30039 288 aaPredicted RBP24.26■■□□□ 1.47
UPF3A-209ENST00000492270 SLC19A1P41440 591 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 MAPK9P45984 424 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 LIMK2P53671 638 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 GPLD1P80108 840 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 SQSTM1Q13501 440 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 CLPPQ16740 277 aaPredicted RBP24.26■■□□□ 1.47
UPF3A-209ENST00000492270 FNBP1LQ5T0N5 605 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 FAM83HQ6ZRV2 1179 aaPredicted RBP24.26■■□□□ 1.47
UPF3A-209ENST00000492270 SPACA3Q8IXA5 215 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 AHCYL2Q96HN2 611 aaKnown RBP24.26■■□□□ 1.47
UPF3A-209ENST00000492270 TBC1D10AQ9BXI6 508 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 CRLS1Q9UJA2 301 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 WDR37Q9Y2I8 494 aa24.26■■□□□ 1.47
UPF3A-209ENST00000492270 PRAMEF33A0A0G2JMD5 474 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 OR52A4PA6NMU1 304 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 AGAP14A8MT82 685 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 CEP104O60308 925 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 POP7O75817 140 aaKnown RBP24.25■■□□□ 1.47
UPF3A-209ENST00000492270 ZSCAN5DPP0CG00 497 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 PRSS56P0CW18 603 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 XRCC1P18887 633 aaPredicted RBP24.25■■□□□ 1.47
UPF3A-209ENST00000492270 IDSP22304 550 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 MC4RP32245 332 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 CDKN1CP49918 316 aaPredicted RBP24.25■■□□□ 1.47
UPF3A-209ENST00000492270 CCNG2Q16589 344 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 KCTD19Q17RG1 926 aaPredicted RBP24.25■■□□□ 1.47
UPF3A-209ENST00000492270 JAMLQ86YT9 394 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 OR4D9Q8NGE8 314 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 OR10G6Q8NH81 332 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 SGF29Q96ES7 293 aa24.25■■□□□ 1.47
UPF3A-209ENST00000492270 DUX1O43812 170 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 THRAP10827 490 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 VCLP18206 1134 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 FDFT1P37268 417 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 HADHAP40939 763 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 GRIA1P42261 906 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 MLLT3P42568 568 aaPredicted RBP24.24■■□□□ 1.47
UPF3A-209ENST00000492270 TLE3Q04726 772 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 NFE2L1Q14494 772 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 ABRAXAS1Q6UWZ7 409 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 SNX20Q7Z614 316 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 AMZ2Q86W34 360 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 NXPE1Q8N323 547 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 CCDC89Q8N998 374 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 KCNE4Q8WWG9 221 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 SH3KBP1Q96B97 665 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 CMKLR1Q99788 373 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 RAB6BQ9NRW1 208 aa24.24■■□□□ 1.47
UPF3A-209ENST00000492270 NLE1Q9NVX2 485 aaPredicted RBP24.24■■□□□ 1.47
UPF3A-209ENST00000492270 SGTAO43765 313 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 VIPP01282 170 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 CCL4P13236 92 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 ITGALP20701 1170 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 SLC5A2P31639 672 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 MAPK10P53779 464 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 EPHA4P54764 986 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 DMPKQ09013 629 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 SEMA5AQ13591 1074 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 CLCA4Q14CN2 919 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 LONRF2Q1L5Z9 754 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 CCDC38Q502W7 563 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 AGAP9Q5VTM2 703 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 TMEM71Q6P5X7 295 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 WASH2PQ6VEQ5 465 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 LINC00523Q86TU6 105 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 PDZD3Q86UT5 571 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 TRIM48Q8IWZ4 208 aa24.23■■□□□ 1.47
UPF3A-209ENST00000492270 C19orf43Q9BQ61 176 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms