RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 HACD3Q9P035 362 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 RIMKLBQ9ULI2 386 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 PADI4Q9UM07 663 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 NFS1Q9Y697 457 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 APC2O95996 2303 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 A0A087WV48 116 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 CPED1A4D0V7 1026 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 ANKRD66B4E2M5 251 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 PNLIPP16233 465 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 TPH1P17752 444 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 LHCGRP22888 699 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 SSTR1P30872 391 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 CRADDP78560 199 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 GPS2Q13227 327 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 GALNT3Q14435 633 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 POU6F1Q14863 301 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 CRYMQ14894 314 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 KLHL38Q2WGJ6 581 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 UBAP2Q5T6F2 1119 aaKnown RBP16.86■□□□□ 0.29
VIM-205ENST00000485947 OGFOD3Q6PK18 319 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 IGF2-ASQ6U949 168 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 RD3Q7Z3Z2 195 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 BRSK1Q8TDC3 778 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 ACSS3Q9H6R3 686 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 TRNAU1APQ9NX07 287 aaKnown RBP16.86■□□□□ 0.29
VIM-205ENST00000485947 FETUBQ9UGM5 382 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 AK5Q9Y6K8 562 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 FAM169AQ9Y6X4 670 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 MAST4O15021 2626 aa16.86■□□□□ 0.29
VIM-205ENST00000485947 TMEM202A6NGA9 273 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 CAPN8A6NHC0 703 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 A8MX80 341 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 TMX2-CTNND1H3BSU7 103 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 DXOO77932 396 aaKnown RBP16.85■□□□□ 0.29
VIM-205ENST00000485947 CRTAMO95727 393 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 PDHA1P08559 390 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 ETV3P41162 512 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 MLLT3P42568 568 aaPredicted RBP16.85■□□□□ 0.29
VIM-205ENST00000485947 PDE1BQ01064 536 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 QPCTQ16769 361 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 ANKRD20A4Q4UJ75 823 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 LRRC66Q68CR7 880 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 GUSBP11Q6P575 273 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 CRTC1Q6UUV9 634 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 ADAMTSL4Q6UY14 1074 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 CAPN12Q6ZSI9 719 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 Q6ZVL8 140 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 HSD11B1LQ7Z5J1 315 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.85■□□□□ 0.293e-7■■■■■ 36.2
VIM-205ENST00000485947 FBF1Q8TES7 1133 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 OR1E3Q8WZA6 343 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 ZNF669Q96BR6 464 aaPredicted RBP16.85■□□□□ 0.29
VIM-205ENST00000485947 PDXPQ96GD0 296 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 CYTH2Q99418 400 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 CDH19Q9H159 772 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 TRABDQ9H4I3 376 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 PLAC1Q9HBJ0 212 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 FGF22Q9HCT0 170 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 GPR34Q9UPC5 381 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 GPSM3Q9Y4H4 160 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 RPS6KL1Q9Y6S9 549 aa16.85■□□□□ 0.29
VIM-205ENST00000485947 LRRK1Q38SD2 2015 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 CELSR3Q9NYQ7 3312 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 ASXL3Q9C0F0 2248 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 TCRBV9S1A1TA0A576 114 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 PRSS38A1L453 326 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 PAMP19021 973 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 LSSP48449 732 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 STC1P52823 247 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 CDK3Q00526 305 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 PTSQ03393 145 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 NAB1Q13506 487 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 SEPT6Q14141 434 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 ISXQ2M1V0 245 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 TSTD2Q5T7W7 516 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 RAET1GQ6H3X3 334 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 RBM44Q6ZP01 1051 aaKnown RBP16.84■□□□□ 0.29
VIM-205ENST00000485947 HEATR4Q86WZ0 1026 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 MARCH9Q86YJ5 346 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 CNPY4Q8N129 248 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 RIBC1Q8N443 379 aaPredicted RBP16.84■□□□□ 0.29
VIM-205ENST00000485947 GPR156Q8NFN8 814 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 SNIP1Q8TAD8 396 aaKnown RBP16.84■□□□□ 0.29
VIM-205ENST00000485947 UHMK1Q8TAS1 419 aaKnown RBP16.84■□□□□ 0.29
VIM-205ENST00000485947 AP2M1Q96CW1 435 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 SCARF2Q96GP6 870 aaPredicted RBP16.84■□□□□ 0.29
VIM-205ENST00000485947 C19orf43Q9BQ61 176 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 LGR4Q9BXB1 951 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 GSDMCQ9BYG8 508 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 MAGEE1Q9HCI5 957 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 CHRAC1Q9NRG0 131 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 MOCS1Q9NZB8 636 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.84■□□□□ 0.29
VIM-205ENST00000485947 RABGEF1Q9UJ41 708 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 SLC17A4Q9Y2C5 497 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 RAXQ9Y2V3 346 aa16.84■□□□□ 0.29
VIM-205ENST00000485947 ZCWPW2A0A1B0GU75 182 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 EXOC1LA0A1B0GW35 172 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 MROH6A6NGR9 719 aa16.83■□□□□ 0.28
VIM-205ENST00000485947 GOLGA6L10A6NI86 522 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms