RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ARHGAP36Q6ZRI8 547 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 DPPA4Q7L190 304 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 SRLQ86TD4 932 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 FJX1Q86VR8 437 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 SLC38A9Q8NBW4 561 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 GPT2Q8TD30 523 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 RSC1A1Q92681 617 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 SCAMP4Q969E2 229 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 PNPLA2Q96AD5 504 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 ECHDC3Q96DC8 303 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 NUS1Q96E22 293 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 CELF6Q96J87 481 aaKnown RBP5.21□□□□□ -1.58
PTPN4-209ENST00000469511 C9orf72Q96LT7 481 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 TGM7Q96PF1 710 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 OR2M4Q96R27 311 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 BARD1Q99728 777 aaKnown RBP5.21□□□□□ -1.58
PTPN4-209ENST00000469511 DPYSL5Q9BPU6 564 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 NCAPGQ9BPX3 1015 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 BRD8Q9H0E9 1235 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 AKTIPQ9H8T0 292 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 PHPT1Q9NRX4 125 aaPredicted RBP5.21□□□□□ -1.58
PTPN4-209ENST00000469511 GOLGA6AQ9NYA3 693 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 STAP1Q9ULZ2 295 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 HPCAL4Q9UM19 191 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 KCNK6Q9Y257 313 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 ZNF451Q9Y4E5 1061 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 PCDHB14Q9Y5E9 798 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 NUP210LQ5VU65 1888 aa5.21□□□□□ -1.58
PTPN4-209ENST00000469511 SNRNP200O75643 2136 aaKnown RBP5.21□□□□□ -1.58
PTPN4-209ENST00000469511 ZNF469Q96JG9 3925 aaPredicted RBP5.21□□□□□ -1.58
PTPN4-209ENST00000469511 MN1Q10571 1320 aaPredicted RBP5.21□□□□□ -1.58
PTPN4-209ENST00000469511 GTF3C1Q12789 2109 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 PCM1Q15154 2024 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 CXorf51AA0A1B0GTR3 108 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 CFAP69A5D8W1 941 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 C19orf84I3L1E1 186 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 E2F3O00716 465 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 FANCGO15287 622 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 PRICKLE3O43900 615 aaPredicted RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 DPM1O60762 260 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 DNAJC6O75061 913 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 TMEM63AO94886 807 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 HEXIM1O94992 359 aaKnown RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 ZNF202O95125 648 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 ATP1A1P05023 1023 aaKnown RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 MYL1P05976 194 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 ZSCAN22P10073 491 aaPredicted RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 FGF5P12034 268 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 CTPS1P17812 591 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 GARSP41250 739 aaKnown RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 GABRB2P47870 512 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 GLRBP48167 497 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 GIPRP48546 466 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 SUOXP51687 545 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 HDAC4P56524 1084 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 STX17P56962 302 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 GEMIN4P57678 1058 aaKnown RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 CLCQ05315 142 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 GPS2Q13227 327 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 MTA1Q13330 715 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 IHHQ14623 411 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 CDSNQ15517 529 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 ZBTB37Q5TC79 503 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 TAF3Q5VWG9 929 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 RAET1GQ6H3X3 334 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 DPY19L2P1Q6NXN4 242 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 TTI2Q6NXR4 508 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 DUS1LQ6P1R4 473 aaKnown RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 TRIM65Q6PJ69 517 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 BRAT1Q6PJG6 821 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 GK5Q6ZS86 529 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 FAM92BQ6ZTR7 304 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 CHST15Q7LFX5 561 aaPredicted RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 TECPR1Q7Z6L1 1165 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 CUZD1Q86UP6 607 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 KCNMB4Q86W47 210 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 DNAAF5Q86Y56 855 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 TRIM59Q8IWR1 403 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 ZBTB2Q8N680 514 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 RTL3Q8N8U3 475 aaKnown RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 OR6P1Q8NGX9 317 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 HCAR2Q8TDS4 363 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 RXFP2Q8WXD0 754 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 SHC3Q92529 594 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 CCDC47Q96A33 483 aaKnown RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 C18orf8Q96DM3 657 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 TBC1D31Q96DN5 1066 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 DTD2Q96FN9 168 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 ZNF641Q96N77 438 aaPredicted RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 FANCD2OSQ96PS1 177 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 PLEKHG4BQ96PX9 1271 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 SMAD5Q99717 465 aaKnown RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 TRIM8Q9BZR9 551 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 SLC39A8Q9C0K1 460 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 ABCG8Q9H221 673 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 CHST8Q9H2A9 424 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 SYNCQ9H7C4 482 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 ARFGAP3Q9NP61 516 aa5.2□□□□□ -1.58
PTPN4-209ENST00000469511 SARS2Q9NP81 518 aaKnown RBP5.2□□□□□ -1.58
PTPN4-209ENST00000469511 SIX2Q9NPC8 291 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms