RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ADRA1DP25100 572 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 ZNF140P52738 457 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-205ENST00000465238 SESN2P58004 480 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-205ENST00000465238 TMPRSS15P98073 1019 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 CLN3Q13286 438 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 ITGA9Q13797 1035 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 TUBB2AQ13885 445 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 HLTFQ14527 1009 aaKnown RBP eCLIP17.5■□□□□ 0.39
COL7A1-205ENST00000465238 CHRNA6Q15825 494 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 SKIDA1Q1XH10 827 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 LRRC8BQ6P9F7 803 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 INO80CQ6PI98 192 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-205ENST00000465238 PCGF5Q86SE9 256 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 TRIM74Q86UV6 250 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 JAMLQ86YT9 394 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 OR13C4Q8NGS5 318 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 STYXQ8WUJ0 223 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 GLYATL1Q969I3 302 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 COX14Q96I36 57 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 TUBB2BQ9BVA1 445 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 FRMD8Q9BZ67 464 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-205ENST00000465238 LRIT1Q9P2V4 623 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 FKBPLQ9UIM3 349 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 CNOT6Q9ULM6 557 aaKnown RBP17.5■□□□□ 0.39
COL7A1-205ENST00000465238 TMEM98Q9Y2Y6 226 aa17.5■□□□□ 0.39
COL7A1-205ENST00000465238 B4DGG1 531 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 TTI1O43156 1089 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 CEACAM5P06731 702 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 SLC5A2P31639 672 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 C2orf54Q08AI8 447 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 WHAMMP3Q1A5X7 153 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 ATP13A5Q4VNC0 1218 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 CCDC38Q502W7 563 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 ANKRD22Q5VYY1 191 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 CCDC81Q6ZN84 652 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 NLRP9Q7RTR0 991 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 MAATS1Q7Z4T9 603 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 SPRED1Q7Z699 444 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 ZNF605Q86T29 641 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 PPIL6Q8IXY8 311 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 Q8N9G6 341 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-205ENST00000465238 PPHLN1Q8NEY8 458 aaKnown RBP17.49■□□□□ 0.39
COL7A1-205ENST00000465238 CCL4L1Q8NHW4 92 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 GDAP1Q8TB36 358 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 ZNF398Q8TD17 642 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 TMEM159Q96B96 161 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 DNAJC1Q96KC8 554 aaKnown RBP17.49■□□□□ 0.39
COL7A1-205ENST00000465238 RANBP9Q96S59 729 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 CARS2Q9HA77 564 aaKnown RBP17.49■□□□□ 0.39
COL7A1-205ENST00000465238 NLE1Q9NVX2 485 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-205ENST00000465238 ACSL6Q9UKU0 697 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 SLC17A4Q9Y2C5 497 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 RNF215Q9Y6U7 377 aa17.49■□□□□ 0.39
COL7A1-205ENST00000465238 MROH6A6NGR9 719 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 UGT1A9O60656 530 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 JMJD7P0C870 316 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 UGT1A6P19224 532 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 UGT1A1P22309 533 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 UGT1A4P22310 534 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 UGT1A3P35503 534 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 POLD2P49005 469 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 ZFP36L1Q07352 338 aaKnown RBP17.48■□□□□ 0.39
COL7A1-205ENST00000465238 ILF3Q12906 894 aaKnown RBP eCLIP17.48■□□□□ 0.39
COL7A1-205ENST00000465238 PCID2Q5JVF3 399 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 PHYKPLQ8IUZ5 450 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 MCUQ8NE86 351 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 GPBAR1Q8TDU6 330 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 TTC9Q92623 222 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 VPS35Q96QK1 796 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 CCNL2Q96S94 520 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-205ENST00000465238 GSDMCQ9BYG8 508 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 IL22Q9GZX6 179 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 ASB8Q9H765 288 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 SUDS3Q9H7L9 328 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-205ENST00000465238 UGT1A7Q9HAW7 530 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 UGT1A10Q9HAW8 530 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 UGT1A8Q9HAW9 530 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 TRIM39Q9HCM9 518 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 XAB2Q9HCS7 855 aaKnown RBP17.48■□□□□ 0.39
COL7A1-205ENST00000465238 TRNAU1APQ9NX07 287 aaKnown RBP17.48■□□□□ 0.39
COL7A1-205ENST00000465238 VPS18Q9P253 973 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 ATXN7L1Q9ULK2 861 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-205ENST00000465238 TCAF1Q9Y4C2 921 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 SLC30A1Q9Y6M5 507 aa17.48■□□□□ 0.39
COL7A1-205ENST00000465238 ZNF106Q9H2Y7 1883 aaKnown RBP17.48■□□□□ 0.39
COL7A1-205ENST00000465238 CCDC78A2IDD5 438 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 FAM187AA6NFU0 413 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 GOLGA8MH3BSY2 632 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 DNALI1O14645 258 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-205ENST00000465238 NVLO15381 856 aaKnown RBP17.47■□□□□ 0.39
COL7A1-205ENST00000465238 SRP72O76094 671 aaKnown RBP17.47■□□□□ 0.39
COL7A1-205ENST00000465238 TMEM63AO94886 807 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 PRAMEF1O95521 474 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 IVLP07476 585 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 MLNP12872 115 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 ITGALP20701 1170 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 MGAT1P26572 445 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 GNPDA1P46926 289 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 TSTD2Q5T7W7 516 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 RNASEH2BQ5TBB1 312 aaKnown RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms