RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 KLHL42Q9P2K6 505 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 GULP1Q9UBP9 304 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 CORO1CQ9ULV4 474 aaPredicted RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 NDUFS3O75489 264 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 TMEM63AO94886 807 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 ACP5P13686 325 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 CD151P48509 253 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 POLD2P49005 469 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 SHC2P98077 582 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 KLHL35Q6PF15 583 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 ABRAXAS1Q6UWZ7 409 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 ZNF534Q76KX8 674 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 ZNF438Q7Z4V0 828 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 PHC3Q8NDX5 983 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 IFI44Q8TCB0 444 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 ZNF592Q92610 1267 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 TMEM159Q96B96 161 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 KCTD3Q9Y597 815 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 SDK1Q7Z5N4 2213 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 LILRA5A6NI73 299 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 CD3EAPO15446 510 aaKnown RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 TTI1O43156 1089 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 BUD23O43709 281 aaKnown RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 POP7O75817 140 aaKnown RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 GOT2P00505 430 aaKnown RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 GPLD1P80108 840 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 DBN1Q16643 649 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 LONRF1Q17RB8 773 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 CHST15Q7LFX5 561 aaPredicted RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 SLC35F3Q8IY50 421 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 C17orf53Q8N3J3 647 aaPredicted RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 KYQ8NBH2 561 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 OR13J1Q8NGT2 312 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 TMEM74Q96NL1 305 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 MRPL40Q9NQ50 206 aaKnown RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 B4DGG1 531 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 PRMT5O14744 637 aaPredicted RBP10.53□□□□□ -0.72
UBR4-208ENST00000459947 UGT1A9O60656 530 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 SPAG6O75602 509 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 UGT1A6P19224 532 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 UGT1A1P22309 533 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 UGT1A4P22310 534 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 KCNA4P22459 653 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 UGT1A3P35503 534 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 UGT1A5P35504 534 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 OLIG2Q13516 323 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 HLTFQ14527 1009 aaKnown RBP eCLIP10.53□□□□□ -0.72
UBR4-208ENST00000459947 N4BP2L1Q5TBK1 243 aaPredicted RBP10.53□□□□□ -0.72
UBR4-208ENST00000459947 CRTC3Q6UUV7 619 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 KIAA0408Q6ZU52 694 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 GALNT7Q86SF2 657 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 TMEM135Q86UB9 458 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 CAND1Q86VP6 1230 aaKnown RBP10.53□□□□□ -0.72
UBR4-208ENST00000459947 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.53□□□□□ -0.72
UBR4-208ENST00000459947 ZNF669Q96BR6 464 aaPredicted RBP10.53□□□□□ -0.72
UBR4-208ENST00000459947 ABCG4Q9H172 646 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 UGT1A7Q9HAW7 530 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 UGT1A10Q9HAW8 530 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 UGT1A8Q9HAW9 530 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 KLC4Q9NSK0 619 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 AKAP7Q9P0M2 348 aaPredicted RBP10.53□□□□□ -0.72
UBR4-208ENST00000459947 MTRF1LQ9UGC7 380 aaKnown RBP10.53□□□□□ -0.72
UBR4-208ENST00000459947 MAD1L1Q9Y6D9 718 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 NOBOXO60393 691 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 RPN2P04844 631 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 XRCC1P18887 633 aaPredicted RBP10.53□□□□□ -0.72
UBR4-208ENST00000459947 ADARP55265 1226 aaKnown RBP10.53□□□□□ -0.72
UBR4-208ENST00000459947 SQSTM1Q13501 440 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 ANKRD20A4Q4UJ75 823 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 PRUNE1Q86TP1 453 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 NRROSQ86YC3 692 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 RASGEF1AQ8N9B8 481 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 EBNA1BP2Q99848 306 aaKnown RBP10.53□□□□□ -0.72
UBR4-208ENST00000459947 CCDC68Q9H2F9 335 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 FAM169AQ9Y6X4 670 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 GON4LQ3T8J9 2241 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 A0A0U1RQS6 177 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 SPAARA0A1B0GVQ0 90 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 PDZK1P1A8MUH7 402 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 SLC35G4P0C7Q5 338 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 ANKRD22Q5VYY1 191 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 SLC30A9Q6PML9 568 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 CXorf40BQ96DE9 158 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 STRADBQ9C0K7 418 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 TMPRSS11EQ9UL52 423 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 RPS6KL1Q9Y6S9 549 aa10.53□□□□□ -0.72
UBR4-208ENST00000459947 FAM221BA6H8Z2 402 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 TMEM8BA6NDV4 472 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 IFRD1O00458 451 aaPredicted RBP10.52□□□□□ -0.72
UBR4-208ENST00000459947 ESR1P03372 595 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 IVDP26440 423 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 ATP5DP30049 168 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 GRIA1P42261 906 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 ITGA8P53708 1063 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 EIF3IQ13347 325 aaKnown RBP10.52□□□□□ -0.72
UBR4-208ENST00000459947 TRA2AQ13595 282 aaKnown RBP eCLIP10.52□□□□□ -0.72
UBR4-208ENST00000459947 TYSND1Q2T9J0 566 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 LRRC8EQ6NSJ5 796 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 NEPROQ6NW34 567 aa10.52□□□□□ -0.72
UBR4-208ENST00000459947 CYB5D1Q6P9G0 228 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms