RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 SLC30A6Q6NXT4 461 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 TEX38Q6PEX7 206 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 PAPD4Q6PIY7 484 aaKnown RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 SPSB3Q6PJ21 355 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 ADGRA1Q86SQ6 560 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 ADIPOR2Q86V24 386 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 TMPRSS12Q86WS5 348 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 MAP7D3Q8IWC1 876 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 HACE1Q8IYU2 909 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 TMTC2Q8N394 836 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 FBXO39Q8N4B4 442 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 MINDY1Q8N5J2 469 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 EMC1Q8N766 993 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 SYT2Q8N9I0 419 aaPredicted RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 Q8NFD4 153 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 TBC1D16Q8TBP0 767 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 PTPMT1Q8WUK0 201 aaPredicted RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 ABTB1Q969K4 478 aaPredicted RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 MTBPQ96DY7 904 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 MMTAG2Q9BU76 263 aaKnown RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 C1QTNF1Q9BXJ1 281 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 ANKRD2Q9GZV1 360 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 CSTL1Q9H114 145 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 SEMA6AQ9H2E6 1030 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 OSGEPL1Q9H4B0 414 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 SLC35C2Q9NQQ7 365 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 MBNL1Q9NR56 388 aaKnown RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 C5AR2Q9P296 337 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 LARSQ9P2J5 1176 aaKnown RBP3.43□□□□□ -1.86
VPS41-207ENST00000439468 MALT1Q9UDY8 824 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 GIMAP2Q9UG22 337 aa3.43□□□□□ -1.86
VPS41-207ENST00000439468 GPR75-ASB3A0A0A6YYF3 556 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 A0A0G2JPF8 293 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 TSPY2A6NKD2 308 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 A6NL46 340 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 SMTNL1A8MU46 457 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 HNRNPCL3B7ZW38 293 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 HS3ST1O14792 307 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 KCNN4O15554 427 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 ZBTB43O43298 467 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 ZNF500O60304 480 aaPredicted RBP3.42□□□□□ -1.86
VPS41-207ENST00000439468 CREG1O75629 220 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 WISP2O76076 250 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 ZNF432O94892 652 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 PMS2P2O95744 297 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 GH2P01242 217 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 LINC00271P0C7V0 271 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 TSPY3P0CV98 308 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 TSPY8P0CW00 308 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 HNRNPCL4P0DMR1 293 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 GABRA5P31644 462 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 CDH13P55290 713 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 TSPY1Q01534 308 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 DLG1Q12959 904 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 PRPF4BQ13523 1007 aaKnown RBP3.42□□□□□ -1.86
VPS41-207ENST00000439468 KRT33BQ14525 404 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 ZNF628Q5EBL2 1059 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 EFHC1Q5JVL4 640 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 C6orf163Q5TEZ5 329 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.42□□□□□ -1.86
VPS41-207ENST00000439468 KRBA2Q6ZNG9 492 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 C16orf82Q7Z2V1 217 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 ARMC9Q7Z3E5 817 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 GPR180Q86V85 440 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 GALNT13Q8IUC8 556 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 POGLUT1Q8NBL1 392 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 SLC38A9Q8NBW4 561 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 RBM15BQ8NDT2 890 aaKnown RBP3.42□□□□□ -1.86
VPS41-207ENST00000439468 TAS1R2Q8TE23 839 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 SNRNP27Q8WVK2 155 aaKnown RBP3.42□□□□□ -1.86
VPS41-207ENST00000439468 ZNF622Q969S3 477 aaKnown RBP eCLIP3.42□□□□□ -1.861e-9■■■□□ 16.4
VPS41-207ENST00000439468 RADILQ96JH8 1075 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 LINC00615Q96LM1 132 aaPredicted RBP3.42□□□□□ -1.86
VPS41-207ENST00000439468 OR1F2PQ96R84 312 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 CCDC106Q9BWC9 280 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 C1QTNF4Q9BXJ3 329 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 TMEM39BQ9GZU3 492 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 KCNK15Q9H427 330 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 GAREM1Q9H706 876 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 CCDC177Q9NQR7 707 aaPredicted RBP3.42□□□□□ -1.86
VPS41-207ENST00000439468 MCM9Q9NXL9 1143 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 TAB2Q9NYJ8 693 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 CRNNQ9UBG3 495 aaPredicted RBP3.42□□□□□ -1.86
VPS41-207ENST00000439468 OR2W1Q9Y3N9 320 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 ZNF711Q9Y462 761 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 NFS1Q9Y697 457 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 PTPRCP08575 1304 aa3.42□□□□□ -1.86
VPS41-207ENST00000439468 IGLV5-37A0A075B6J1 123 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 A0A1W2PP11 408 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 CLGNO14967 610 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 LDB3O75112 727 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 TADA2AO75478 443 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 RFPL2O75678 378 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 IGKV3-20P01619 116 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 HLA-DOBP13765 273 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 ITGA2P17301 1181 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 TMPOP42166 694 aaKnown RBP3.41□□□□□ -1.86
VPS41-207ENST00000439468 LIG4P49917 911 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 ERVFC1-1P60608 527 aa3.41□□□□□ -1.86
VPS41-207ENST00000439468 EEF1A2Q05639 463 aaKnown RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms