RNA–Protein interactions for RNA: ENST00000436638.5

ECHDC1-208, Transcript of ethylmalonyl-CoA decarboxylase 1, human

APPRIS ALT2 TSL 3

Gene ECHDC1, Length 766 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-208	ENST00000436638	LMAN1	P49257	510 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	GEM	P55040	296 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	RPS14	P62263	151 aa	Known RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	CD83	Q01151	205 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	DSC2	Q02487	901 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	BNIP3	Q12983	259 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SQSTM1	Q13501	440 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	TERF2	Q15554	542 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	CST6	Q15828	149 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	WHAMMP3	Q1A5X7	153 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	P3H1	Q32P28	736 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	USP39	Q53GS9	565 aa	Known RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SNAP47	Q5SQN1	464 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	THOC7	Q6I9Y2	204 aa	Known RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	FBXL19	Q6PCT2	694 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	DRICH1	Q6PGQ1	229 aa	Predicted RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	NCEH1	Q6PIU2	408 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	C4orf22	Q6V702	233 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	GDPD4	Q6W3E5	623 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	IKBIP	Q70UQ0	350 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	KBTBD6	Q86V97	674 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SPATA24	Q86W54	205 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	CACUL1	Q86Y37	369 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	KLHL7	Q8IXQ5	586 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	HDDC3	Q8N4P3	179 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	TEX26	Q8N6G2	289 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	FAM71D	Q8N9W8	422 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	CHST14	Q8NCH0	376 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	TMIE	Q8NEW7	156 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	PDCD6IP	Q8WUM4	868 aa	Known RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	HDAC2	Q92769	488 aa	Known RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	NKD2	Q969F2	451 aa	Predicted RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	TRIM63	Q969Q1	353 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	RHOV	Q96L33	236 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	MRGPRX1	Q96LB2	322 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	TEKT5	Q96M29	485 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ZNF641	Q96N77	438 aa	Predicted RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SPATA13	Q96N96	652 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SMAD5	Q99717	465 aa	Known RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	MIPEP	Q99797	713 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	PRRX2	Q99811	253 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	MGME1	Q9BQP7	344 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	TMEM121	Q9BTD3	319 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	TPSD1	Q9BZJ3	242 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	C10orf88	Q9H8K7	445 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	GLOD4	Q9HC38	313 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	POLR3B	Q9NW08	1133 aa	Predicted RBP	6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	FKBP14	Q9NWM8	211 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SMARCAL1	Q9NZC9	954 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ATPIF1	Q9UII2	106 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	DMTF1	Q9Y222	760 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SLC5A6	Q9Y289	635 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638		U3KQE9	123 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	CDH23	Q9H251	3354 aa		6.17	□□□□□ -1.42
ECHDC1-208	ENST00000436638	LAMA2	P24043	3122 aa	Known RBP	6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	C17orf113	A0A1B0GUU1	675 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638		A0A1B0GVC2	190 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	C5orf60	A6NFR6	353 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ENO4	A6NNW6	628 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	MASP2	O00187	686 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	NEMP1	O14524	444 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	MID1	O15344	667 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SOCS5	O75159	536 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	NDUFS2	O75306	463 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SLITRK5	O94991	958 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	PIGN	O95427	931 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	CP	P00450	1065 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	KRT14	P02533	472 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	UGT2B4	P06133	528 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ITGAV	P06756	1048 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	CYP2A6	P11509	494 aa	Predicted RBP	6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	OXTR	P30559	389 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	HOXA6	P31267	233 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	GK	P32189	559 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	CSTF2	P33240	577 aa	Known RBP eCLIP	6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	FDFT1	P37268	417 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	COIL	P38432	576 aa	Predicted RBP	6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	RGR	P47804	291 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	KCNJ1	P48048	391 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	PXN	P49023	591 aa	Predicted RBP	6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	FNTA	P49354	379 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SLC12A2	P55011	1212 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	POLR2L	P62875	67 aa	Known RBP	6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	MPP1	Q00013	466 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ANGPT1	Q15389	498 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	SIX1	Q15475	284 aa	Predicted RBP	6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	STK11	Q15831	433 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	PARP6	Q2NL67	630 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	POM121L1P	Q3SYA9	428 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ZNF805	Q5CZA5	627 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ANKRD20A2	Q5SQ80	823 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ARMC12	Q5T9G4	340 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ANKRD20A1	Q5TYW2	823 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	ANKRD20A3	Q5VUR7	823 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	PRAMEF13	Q5VWM6	474 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	BRAT1	Q6PJG6	821 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	CCDC137	Q6PK04	289 aa	Known RBP	6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	TSSK4	Q6SA08	328 aa		6.16	□□□□□ -1.42
ECHDC1-208	ENST00000436638	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	6.16	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 178.1 ms