RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 SLC39A12Q504Y0 691 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 GDF6Q6KF10 455 aaPredicted RBP9.7□□□□□ -0.86
CD44-206ENST00000415148 FAM117BQ6P1L5 589 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 SCIMPQ6UWF3 145 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 SYVN1Q86TM6 617 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 ITIH5Q86UX2 942 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 OR13C4Q8NGS5 318 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 HASPINQ8TF76 798 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 BORCS5Q969J3 196 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 RDH12Q96NR8 316 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 TRIB3Q96RU7 358 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 SEPHS2Q99611 448 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 HGH1Q9BTY7 390 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 PCTPQ9UKL6 214 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 IKZF3Q9UKT9 509 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 PADI3Q9ULW8 664 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 ARIH1Q9Y4X5 557 aaPredicted RBP9.7□□□□□ -0.86
CD44-206ENST00000415148 CBFA2T3O75081 653 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 DUSP11O75319 330 aaKnown RBP9.69□□□□□ -0.86
CD44-206ENST00000415148 IGLV3-27P01718 113 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 OCM2P0CE71 109 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 OCMP0CE72 109 aaPredicted RBP9.69□□□□□ -0.86
CD44-206ENST00000415148 PRDX3P30048 256 aaKnown RBP9.69□□□□□ -0.86
CD44-206ENST00000415148 OR1E1P30953 314 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 MAGEA11P43364 429 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 UFM1P61960 85 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 GSTM4Q03013 218 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 RING1Q06587 406 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 NFATC3Q12968 1075 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 PRKG2Q13237 762 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 TAF1AQ15573 450 aaPredicted RBP9.69□□□□□ -0.86
CD44-206ENST00000415148 AAK1Q2M2I8 961 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 ZFAND4Q86XD8 727 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 KIAA2013Q8IYS2 634 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 BPIFB6Q8NFQ5 453 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 SNX19Q92543 992 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 VPS50Q96JG6 964 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 MUS81Q96NY9 551 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 CHID1Q9BWS9 393 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 FANCEQ9HB96 536 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 PDFQ9HBH1 243 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 ZFYVE28Q9HCC9 887 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 TBC1D23Q9NUY8 699 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 IFT80Q9P2H3 777 aaPredicted RBP9.69□□□□□ -0.86
CD44-206ENST00000415148 MED16Q9Y2X0 877 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 TIMM22Q9Y584 194 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 COMMD10Q9Y6G5 202 aa9.69□□□□□ -0.86
CD44-206ENST00000415148 MGEA5O60502 916 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 NOL3O60936 208 aaKnown RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 VPS26AO75436 327 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 NDUFS3O75489 264 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 HPRP00739 348 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 ALBP02768 609 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 AKR1A1P14550 325 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 ZNF12P17014 697 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 FMO4P31512 558 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 CLCN4P51793 760 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 ZNF140P52738 457 aaPredicted RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 EFEMP1Q12805 493 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 SFSWAPQ12872 951 aaKnown RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 TSNQ15631 228 aaKnown RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 MOGQ16653 247 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 C5orf22Q49AR2 442 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 RBM48Q5RL73 367 aaKnown RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 OTUD3Q5T2D3 398 aaPredicted RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 C9orf131Q5VYM1 1079 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 SPRYD7Q5W111 196 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 RAP1GAP2Q684P5 730 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 GLYATQ6IB77 296 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 TMEM214Q6NUQ4 689 aaKnown RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 GALNT18Q6P9A2 607 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 ZNF773Q6PK81 442 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 PIWIL3Q7Z3Z3 882 aaKnown RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 GALNT13Q8IUC8 556 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 SFRP1Q8N474 314 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 PDPRQ8NCN5 879 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 NSMCE2Q96MF7 247 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 ZNF382Q96SR6 550 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 PALMDQ9NP74 551 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 HEBP1Q9NRV9 189 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 INTS7Q9NVH2 962 aaKnown RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 TRNAU1APQ9NX07 287 aaKnown RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 ABI2Q9NYB9 513 aaPredicted RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 SLC27A5Q9Y2P5 690 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 GBF1Q92538 1859 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 UBA6A0AVT1 1052 aaPredicted RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 DEAF1O75398 565 aaPredicted RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 BAIAP3O94812 1187 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 C1RP00736 705 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 ITGB1P05556 798 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 CTSHP09668 335 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 MBL2P11226 248 aaPredicted RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 IL7RP16871 459 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 HRH2P25021 359 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 BCAP31P51572 246 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 ALDH3A2P51648 485 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 KPNA1P52294 538 aaPredicted RBP9.68□□□□□ -0.86
CD44-206ENST00000415148 IST1P53990 364 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 EPS8Q12929 822 aa9.68□□□□□ -0.86
CD44-206ENST00000415148 GALNT3Q14435 633 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms