RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 PPP3R2Q96LZ3 170 aa9□□□□□ -0.97
LIG4-202ENST00000405925 FCRL3Q96P31 734 aaPredicted RBP9□□□□□ -0.97
LIG4-202ENST00000405925 TUBGCP5Q96RT8 1024 aa9□□□□□ -0.97
LIG4-202ENST00000405925 GPR22Q99680 433 aa9□□□□□ -0.97
LIG4-202ENST00000405925 ING2Q9H160 280 aa9□□□□□ -0.97
LIG4-202ENST00000405925 NOL11Q9H8H0 719 aaKnown RBP9□□□□□ -0.97
LIG4-202ENST00000405925 COQ6Q9Y2Z9 468 aa9□□□□□ -0.97
LIG4-202ENST00000405925 FFAR2O15552 330 aa9□□□□□ -0.97
LIG4-202ENST00000405925 TOP3BO95985 862 aaKnown RBP9□□□□□ -0.97
LIG4-202ENST00000405925 ENPP7Q6UWV6 458 aa9□□□□□ -0.97
LIG4-202ENST00000405925 ERN2Q76MJ5 926 aaKnown RBP9□□□□□ -0.97
LIG4-202ENST00000405925 OSCP1Q8WVF1 389 aa9□□□□□ -0.97
LIG4-202ENST00000405925 RAD51AP1Q96B01 352 aa9□□□□□ -0.97
LIG4-202ENST00000405925 RTP4Q96DX8 246 aa9□□□□□ -0.97
LIG4-202ENST00000405925 SPACA7Q96KW9 195 aa9□□□□□ -0.97
LIG4-202ENST00000405925 AARSD1Q9BTE6 412 aaKnown RBP9□□□□□ -0.97
LIG4-202ENST00000405925 SSU72Q9NP77 194 aaKnown RBP9□□□□□ -0.97
LIG4-202ENST00000405925 NUDT4Q9NZJ9 180 aa9□□□□□ -0.97
LIG4-202ENST00000405925 CD207Q9UJ71 328 aa9□□□□□ -0.97
LIG4-202ENST00000405925 ARFGEF1Q9Y6D6 1849 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 DRGXA6NNA5 263 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 PDE5AO76074 875 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 PRAMEF12O95522 483 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 COX7A2P14406 83 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 HMGA1P17096 107 aaKnown RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 PGFP49763 221 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 ARSDP51689 593 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 CORO7P57737 925 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 PLOD1Q02809 727 aaPredicted RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 CLCQ05315 142 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 NADSYN1Q6IA69 706 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 TERB1Q8NA31 727 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 MYLIPQ8WY64 445 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 PYCR2Q96C36 320 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 BBS4Q96RK4 519 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 CCL26Q9Y258 94 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 SRRM3A6NNA2 597 aaPredicted RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 GABBR2O75899 941 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 RECQL5O94762 991 aaPredicted RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 SIX3O95343 332 aaPredicted RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 OAS1P00973 400 aaKnown RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 NTRK1P04629 796 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 ECHS1P30084 290 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 ETV3P41162 512 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 LCP2Q13094 533 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 UBAP2LQ14157 1087 aaKnown RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 MRPL58Q14197 206 aaKnown RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 VWA5B1Q5TIE3 1220 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 RANBP10Q6VN20 620 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 ZNF621Q6ZSS3 439 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 EFCAB3Q8N7B9 438 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 NT5C3BQ969T7 300 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 MYRFLQ96LU7 910 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 MAGEB10Q96LZ2 347 aaPredicted RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 C12orf66Q96MD2 445 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 SH3GL1Q99961 368 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 SIPA1L1O43166 1804 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 SIN3BO75182 1162 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 POP7O75817 140 aaKnown RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 GSRP00390 522 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 CTSOP43234 321 aaPredicted RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 GNPDA1P46926 289 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 TMEM135Q86UB9 458 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 NXPE1Q8N323 547 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 TCAIMQ8N3R3 496 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 TXNDC5Q8NBS9 432 aaKnown RBP8.99□□□□□ -0.97
LIG4-202ENST00000405925 LRIG1Q96JA1 1093 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 TSSK3Q96PN8 268 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 NLNQ9BYT8 704 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 CRISPLD2Q9H0B8 497 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 MAGEE1Q9HCI5 957 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 KLHL3Q9UH77 587 aa8.99□□□□□ -0.97
LIG4-202ENST00000405925 TRAFD1O14545 582 aaPredicted RBP8.98□□□□□ -0.97
LIG4-202ENST00000405925 ZW10O43264 779 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 PBX2P40425 430 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 PKNOX1P55347 436 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 NRG1Q02297 640 aaPredicted RBP8.98□□□□□ -0.97
LIG4-202ENST00000405925 CYTH1Q15438 398 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 TCHHL1Q5QJ38 904 aaPredicted RBP8.98□□□□□ -0.97
LIG4-202ENST00000405925 CYP20A1Q6UW02 462 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 RELL1Q8IUW5 271 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 CLEC4FQ8N1N0 589 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 CPXM2Q8N436 756 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 ZNF781Q8N8C0 355 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 APOLD1Q96LR9 279 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 QRFPRQ96P65 431 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 CDRT15Q96T59 188 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 MGME1Q9BQP7 344 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 NLE1Q9NVX2 485 aaPredicted RBP8.98□□□□□ -0.97
LIG4-202ENST00000405925 PACSIN3Q9UKS6 424 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 LOXHD1Q8IVV2 1947 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 CDC7O00311 574 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 SGTAO43765 313 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 OR4F21O95013 312 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 LRATO95237 230 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 ATP1B2P14415 290 aaPredicted RBP8.98□□□□□ -0.97
LIG4-202ENST00000405925 FOXN2P32314 431 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 CHIT1Q13231 466 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 RCN1Q15293 331 aa8.98□□□□□ -0.97
LIG4-202ENST00000405925 SNAP47Q5SQN1 464 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms