RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 B4GAT1O43505 415 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 ABLIM3O94929 683 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 SLC12A1Q13621 1099 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 SKIV2LQ15477 1246 aaKnown RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 NFE2Q16621 373 aaPredicted RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 SPATS1Q496A3 300 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 ATAD3BQ5T9A4 648 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 PRMT9Q6P2P2 845 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 LAYNQ6UX15 382 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 PIWIL3Q7Z3Z3 882 aaKnown RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 DSG4Q86SJ6 1040 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 SCD5Q86SK9 330 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 SPARTQ8N0X7 666 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 DEFB106AQ8N104 65 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 ZNF567Q8N184 647 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 SPPL3Q8TCT6 385 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 CALML6Q8TD86 181 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 MAGEE2Q8TD90 523 aaPredicted RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 ZFP90Q8TF47 636 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 ZNF486Q96H40 463 aaPredicted RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 UBXN10Q96LJ8 280 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 TCF25Q9BQ70 676 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 BCL7BQ9BQE9 202 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 SP140LQ9H930 580 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 KLQ9UEF7 1012 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 VANGL2Q9ULK5 521 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 BACE2Q9Y5Z0 518 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 DOCK6Q96HP0 2047 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 ILVBLA1L0T0 632 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 NOTOA8MTQ0 251 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 BBIP1A8MTZ0 92 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 F5H423 210 aaPredicted RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 H0Y858 1186 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 TPST1O60507 370 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 DEAF1O75398 565 aaPredicted RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 GPC4O75487 556 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 URODP06132 367 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 CTSAP10619 480 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 GOT1P17174 413 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 CRHBPP24387 322 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 ELK4P28324 431 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 ATP4BP51164 291 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 DNAJB13P59910 316 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 CTF1Q16619 201 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 PITRM1Q5JRX3 1037 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 TSTD2Q5T7W7 516 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 PDZD4Q76G19 769 aaPredicted RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 LACC1Q8IV20 430 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 CENPLQ8N0S6 344 aaPredicted RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 ELMOD1Q8N336 334 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 MINDY1Q8N5J2 469 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 ZNF461Q8TAF7 563 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 POF1BQ8WVV4 589 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 HDAC11Q96DB2 347 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 FUBP3Q96I24 572 aaKnown RBP eCLIP11.03□□□□□ -0.64
CUX1-204ENST00000393824 SCYL1Q96KG9 808 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 MUS81Q96NY9 551 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 TLR9Q9NR96 1032 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.03□□□□□ -0.643e-6■■■■□ 19.4
CUX1-204ENST00000393824 SLC39A10Q9ULF5 831 aa11.03□□□□□ -0.64
CUX1-204ENST00000393824 MYO18AQ92614 2054 aaKnown RBP11.03□□□□□ -0.64
CUX1-204ENST00000393824 SYNJ2BP-COX16A0A087WUM0 186 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 A0A1W2PQ67 120 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 C16orf96A6NNT2 1141 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 A8MU76 341 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 M0QX08 132 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 MTSS1O43312 755 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 MFSD11O43934 449 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 SLC35E2BP0CK96 405 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 HAPLN1P10915 354 aaPredicted RBP11.02□□□□□ -0.64
CUX1-204ENST00000393824 GFAPP14136 432 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 NR4A1P22736 598 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 OXTRP30559 389 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 PPM1AP35813 382 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 ABCG1P45844 678 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 GLRBP48167 497 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 TUBA1BP68363 451 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 GRM3Q14832 879 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 PLPP4Q5VZY2 271 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 PM20D1Q6GTS8 502 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 CNSTQ6PJW8 725 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 USP43Q70EL4 1123 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 TUBA1AQ71U36 451 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 AKAP14Q86UN6 197 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 ARMC8Q8IUR7 673 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 FUNDC1Q8IVP5 155 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 TBC1D21Q8IYX1 336 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 ZCCHC7Q8N3Z6 543 aaKnown RBP11.02□□□□□ -0.64
CUX1-204ENST00000393824 CCNYL1Q8N7R7 359 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 KCTD4Q8WVF5 259 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 GPR78Q96P69 363 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 SOX17Q9H6I2 414 aaPredicted RBP11.02□□□□□ -0.64
CUX1-204ENST00000393824 MRPL17Q9NRX2 175 aaKnown RBP11.02□□□□□ -0.64
CUX1-204ENST00000393824 COX16Q9P0S2 106 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 XPR1Q9UBH6 696 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 DGKBQ9Y6T7 804 aa11.02□□□□□ -0.64
CUX1-204ENST00000393824 H7C4K7 107 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 PSMD11O00231 422 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 RFXAPO00287 272 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 AREL1O15033 823 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms