RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 TRBC1P01850 177 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 FTH1P02794 183 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 FUT4P22083 530 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.48□□□□□ -1.37
SMC1A-202ENST00000375340 SMARCB1Q12824 385 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 TMEM236Q5W0B7 351 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 BTN2A3PQ96KV6 586 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 CAMKK2Q96RR4 588 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 MARCH7Q9H992 704 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 HS3ST4Q9Y661 456 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 ELOVL7A1L3X0 281 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 IFRD1O00458 451 aaPredicted RBP6.48□□□□□ -1.37
SMC1A-202ENST00000375340 LSM1O15116 133 aaKnown RBP6.48□□□□□ -1.37
SMC1A-202ENST00000375340 COL6A1P12109 1028 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 MYL12AP19105 171 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 SERPINA4P29622 427 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 CACNG1Q06432 222 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 RABL3Q5HYI8 236 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 TMEM110Q86TL2 294 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 TRAPPC5Q8IUR0 188 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 ERI1Q8IV48 349 aaKnown RBP6.48□□□□□ -1.37
SMC1A-202ENST00000375340 CACTIN-AS1Q8N1I8 211 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 ARFGAP1Q8N6T3 406 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 SLC16A10Q8TF71 515 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 REPS1Q96D71 796 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 SPRTNQ9H040 489 aaPredicted RBP6.48□□□□□ -1.37
SMC1A-202ENST00000375340 PLK2Q9NYY3 685 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 FFAR2O15552 330 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 NBNO60934 754 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 NDUFS2O75306 463 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 ARSAP15289 507 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 TTKP33981 857 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 HNF4AP41235 474 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 DGKQP52824 942 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 PTPN5P54829 565 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 CREB5Q02930 508 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 CCL14Q16627 93 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 PARP15Q460N3 678 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 SMYD5Q6GMV2 418 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 FBXL19Q6PCT2 694 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 FAM9CQ8IZT9 166 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 SPPL2BQ8TCT7 592 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 TCF25Q9BQ70 676 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 GLYATL1P3A0A0U1RQE8 302 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 LRRC14BA6NHZ5 514 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 NIPSNAP2O75323 286 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 CYP4Z2PQ8N1L4 340 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 MCFD2Q8NI22 146 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 DOCK5Q9H7D0 1870 aa6.48□□□□□ -1.37
SMC1A-202ENST00000375340 RGS10O43665 173 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 TPST2O60704 377 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 PRKAG1P54619 331 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 ECT2LQ008S8 904 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 MAP2K5Q13163 448 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 TARBP2Q15633 366 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 SETMARQ53H47 684 aaPredicted RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 ADAMTSL2Q86TH1 951 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 UBE2J2Q8N2K1 259 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 AADATQ8N5Z0 425 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 UXS1Q8NBZ7 420 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 GTPBP3Q969Y2 492 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 TMEM169Q96HH4 297 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 DEPDC7Q96QD5 511 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 CNPPD1Q9BV87 410 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 FBRSL1Q9HCM7 1045 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 E7ESA3 106 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 CDC7O00311 574 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 SAP18O00422 153 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 CYP2A6P11509 494 aaPredicted RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 ACVRL1P37023 503 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 CDKN2DP55273 166 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 IRF8Q02556 426 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 PCBP1Q15365 356 aaKnown RBP eCLIP6.47□□□□□ -1.379e-13■□□□□ 10.9
SMC1A-202ENST00000375340 PHACTR4Q8IZ21 702 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 IRGQQ8WZA9 623 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 C12orf43Q96C57 262 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 PDE10AQ9Y233 779 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 TESMINQ9Y4I5 508 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 DYTNA2CJ06 578 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 LOC110117498-PIK3R3F6TDL0 507 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 ATP6V1G1O75348 118 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 WBP4O75554 376 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 PRAMEF1O95521 474 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 RPL17P18621 184 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 ANGPT1Q15389 498 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 FNDC3BQ53EP0 1204 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 TIGD5Q53EQ6 642 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 ANKRD23Q86SG2 305 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 C2CD4AQ8NCU7 369 aaPredicted RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 AARSD1Q9BTE6 412 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 ATP13A3Q9H7F0 1226 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 ANKDD1BA6NHY2 528 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 CAPN14A8MX76 684 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 ZNF99A8MXY4 864 aaPredicted RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 PCDH8O95206 1070 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 MAP2K4P45985 399 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 SLC10A7Q0GE19 358 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 PAQR3Q6TCH7 311 aa6.47□□□□□ -1.37
SMC1A-202ENST00000375340 WDR36Q8NI36 951 aaKnown RBP6.47□□□□□ -1.37
SMC1A-202ENST00000375340 TMEM209Q96SK2 561 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms