RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 MORN1Q5T089 497 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 DHDDSQ86SQ9 333 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 TMEM79Q9BSE2 394 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 COQ6Q9Y2Z9 468 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 DNAJC25-GNG10A0A024R161 153 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ALPIP09923 528 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ACVRL1P37023 503 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 NRLP54845 237 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 CSNK2BP67870 215 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 SUZ12Q15022 739 aaKnown RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 SLC1A5Q15758 541 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 TTC29Q8NA56 475 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 TMEM245Q9H330 911 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 RIBC2Q9H4K1 309 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 PACSIN3Q9UKS6 424 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 RFXANKO14593 260 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 IGFALSP35858 605 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 GJA5P36382 358 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 UPP1Q16831 310 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 INAVAQ3KP66 663 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 PIK3R6Q5UE93 754 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 CRYGNQ8WXF5 182 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 SLC9A6Q92581 669 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 OR52E6Q96RD3 313 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ELL3Q9HB65 397 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 NDUFA13Q9P0J0 144 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 RPS6KA6Q9UK32 745 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 PITPNM1O00562 1244 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 RGS5O15539 181 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ZCCHC18P0CG32 403 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 TYRP1P17643 537 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 NCF4Q15080 339 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 TRMT10BQ6PF06 316 aaKnown RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 GPR141Q7Z602 305 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 DHRSXQ8N5I4 330 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ZIC5Q96T25 663 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 GATA5Q9BWX5 397 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 LGALS13Q9UHV8 139 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 MCIDASD6RGH6 385 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 HSPA7P48741 367 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 CYP4F3Q08477 520 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 SLC13A2Q13183 592 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ITPRIPL2Q3MIP1 535 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF598Q86UK7 904 aaKnown RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 TDRPQ86YL5 185 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ADHFE1Q8IWW8 467 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 BHLHE22Q8NFJ8 381 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 OR13C4Q8NGS5 318 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 NUS1Q96E22 293 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 C7orf26Q96N11 449 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 GRIP2Q9C0E4 1043 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 CEP44Q9C0F1 390 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 SSU72Q9NP77 194 aaKnown RBP11.47□□□□□ -0.57
SYNE1-204ENST00000367248 KLHL1Q9NR64 748 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF229Q9UJW7 825 aa11.47□□□□□ -0.57
SYNE1-204ENST00000367248 WNT9AO14904 365 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 TOP3BO95985 862 aaKnown RBP11.46□□□□□ -0.57
SYNE1-204ENST00000367248 PAICSP22234 425 aaKnown RBP11.46□□□□□ -0.57
SYNE1-204ENST00000367248 CMPK1P30085 196 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 MANFP55145 182 aaKnown RBP11.46□□□□□ -0.57
SYNE1-204ENST00000367248 NRG1Q02297 640 aaPredicted RBP11.46□□□□□ -0.57
SYNE1-204ENST00000367248 C1DQ13901 141 aaKnown RBP11.46□□□□□ -0.57
SYNE1-204ENST00000367248 ATP13A5Q4VNC0 1218 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 TRIM40Q6P9F5 258 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 AHI1Q8N157 1196 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 APOL4Q9BPW4 351 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 VPS4AQ9UN37 437 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 DYTNA2CJ06 578 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 A8MUI8 341 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 KIF1CO43896 1103 aaKnown RBP11.46□□□□□ -0.57
SYNE1-204ENST00000367248 FAM58BPP0C7Q3 252 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 CLCQ05315 142 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 TSNQ15631 228 aaKnown RBP11.46□□□□□ -0.57
SYNE1-204ENST00000367248 EPHX4Q8IUS5 362 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 LRTM1Q9HBL6 345 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 CHRNA1P02708 482 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 RYKP34925 604 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 BNIP2Q12982 314 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 CHIT1Q13231 466 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF542PQ5EBM4 170 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 DCAF4L2Q8NA75 395 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 C5orf34Q96MH7 638 aa11.46□□□□□ -0.57
SYNE1-204ENST00000367248 ZNF490Q9ULM2 529 aaPredicted RBP11.46□□□□□ -0.57
SYNE1-204ENST00000367248 CLDN9O95484 217 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 TRBC1P01850 177 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 GRIA3P42263 894 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 UBAP2LQ14157 1087 aaKnown RBP11.46□□□□□ -0.58
SYNE1-204ENST00000367248 CPTPQ5TA50 214 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 SMYD5Q6GMV2 418 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 SNX20Q7Z614 316 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 LMO3Q8TAP4 145 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 PTCD3Q96EY7 689 aaKnown RBP11.46□□□□□ -0.58
SYNE1-204ENST00000367248 C3orf14Q9HBI5 128 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 INTS10Q9NVR2 710 aaKnown RBP11.46□□□□□ -0.58
SYNE1-204ENST00000367248 TIMM22Q9Y584 194 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 LEFTY2O00292 366 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 MAN1A2O60476 641 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 CD72P21854 359 aa11.46□□□□□ -0.58
SYNE1-204ENST00000367248 CDH5P33151 784 aaPredicted RBP11.46□□□□□ -0.58
SYNE1-204ENST00000367248 BRAT1Q6PJG6 821 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms