RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 UTP11Q9Y3A2 253 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 RPS6KL1Q9Y6S9 549 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 CNOT1A5YKK6 2376 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 PCNX2A6NKB5 2137 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 IGLV3-16A0A075B6K0 115 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 CTAGE15A4D2H0 777 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 CD3EAPO15446 510 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 POP7O75817 140 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 CTAGE8P0CG41 777 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 VCLP18206 1134 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 CALCOCO2Q13137 446 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 SEMA3AQ14563 771 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 ANKRD20A4Q4UJ75 823 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 MSS51Q4VC12 460 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 C14orf28Q4W4Y0 310 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 AARS2Q5JTZ9 985 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 LYPLAL1Q5VWZ2 237 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 KIAA0930Q6ICG6 404 aaPredicted RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 OGFOD3Q6PK18 319 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 EFL1Q7Z2Z2 1120 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 CTAGE6Q86UF2 777 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 CTAGE4Q8IX94 777 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 PDIK1LQ8N165 341 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 BBOF1Q8ND07 529 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 GPR156Q8NFN8 814 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 IFI44Q8TCB0 444 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 PATE1Q8WXA2 126 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 SGSM3Q96HU1 749 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 FCRL3Q96P31 734 aaPredicted RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 TTC1Q99614 292 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 MARCH4Q9P2E8 410 aaPredicted RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 TBC1D29Q9UFV1 150 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 GOLGA8KD6RF30 607 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 GOLGA8TH3BQL2 631 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 TP73O15350 636 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 EML2O95834 649 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 ARNTP27540 789 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 MAZP56270 477 aaKnown RBP15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 ARL4CP56559 192 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 ITIH4Q14624 930 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 SEPT7Q16181 437 aaKnown RBP15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 HIF1AQ16665 826 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 BCL7AQ4VC05 210 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 DUPD1Q68J44 220 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 CERS6Q6ZMG9 384 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 LDB1Q86U70 411 aaPredicted RBP15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 AMZ2Q86W34 360 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 NAGSQ8N159 534 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 CLDN19Q8N6F1 224 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 LRRC1Q9BTT6 524 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 PRDM8Q9NQV8 689 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 IL1RAPL1Q9NZN1 696 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 WHRNQ9P202 907 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 FAM8A1Q9UBU6 413 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 PCDHGA1Q9Y5H4 931 aa15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 ZFC3H1O60293 1989 aaKnown RBP15.64■□□□□ 0.09
CCDC28A-201ENST00000332797 TRBV23OR9-2A0A075B6M9 112 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 EME2A4GXA9 379 aaPredicted RBP15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 PDZK1P1A8MUH7 402 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 SGTAO43765 313 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 OR1I1O60431 355 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 USP1O94782 785 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 POLBP06746 335 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 PGAM1P18669 254 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 PPARGP37231 505 aaPredicted RBP15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 NSG1P42857 185 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 PRLHRP49683 370 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 CLCNKAP51800 687 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 SLC7A5Q01650 507 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 FOXC1Q12948 553 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 ILKQ13418 452 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 HLTFQ14527 1009 aaKnown RBP eCLIP15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 HP1BP3Q5SSJ5 553 aaPredicted RBP15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 PERM1Q5SV97 790 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 PACS1Q6VY07 963 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 TMEM135Q86UB9 458 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 NAT6Q93015 286 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 GRHL1Q9NZI5 618 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 CHMP2BQ9UQN3 213 aa15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 DNMT3AQ9Y6K1 912 aaPredicted RBP15.63■□□□□ 0.09
CCDC28A-201ENST00000332797 ZCWPW2A0A1B0GU75 182 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 KCNJ13O60928 360 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 AP2A2O94973 939 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 F3P13726 295 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 SLC2A4P14672 509 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 IDSP22304 550 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 RPL10P27635 214 aaKnown RBP15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 PMLP29590 882 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 ELK3P41970 407 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 ARCN1P48444 511 aaKnown RBP15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 TTPAP49638 278 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 DRG2P55039 364 aaKnown RBP15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 BIRC2Q13490 618 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 NFE2L1Q14494 772 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 MRNIPQ6NTE8 343 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 DHRS13Q6UX07 377 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 FAM83HQ6ZRV2 1179 aaPredicted RBP15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 ERMP1Q7Z2K6 904 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 ARL14Q8N4G2 192 aa15.62■□□□□ 0.09
CCDC28A-201ENST00000332797 MMGT1Q8N4V1 131 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms