RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 HTR1EP28566 365 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 CDKN1CP49918 316 aaPredicted RBP12.64□□□□□ -0.39
LINC00540-203ENST00000631321 SCNN1BP51168 640 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 POLR2JP52435 117 aaKnown RBP12.64□□□□□ -0.39
LINC00540-203ENST00000631321 ARPP19P56211 112 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 CYP51A1Q16850 503 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 FBXO48Q5FWF7 155 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 RABL3Q5HYI8 236 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 GPRIN3Q6ZVF9 776 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 GPSM1Q86YR5 675 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 KIAA2013Q8IYS2 634 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 TBC1D21Q8IYX1 336 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 DPP10Q8N608 796 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 C2orf15Q8WU43 125 aaKnown RBP12.64□□□□□ -0.39
LINC00540-203ENST00000631321 MARCH5Q9NX47 278 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 TMEM161AQ9NX61 479 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 ZNF639Q9UID6 485 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 OAZ3Q9UMX2 235 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 VWA8A3KMH1 1905 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 FAM149AA5PLN7 773 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 SLC38A8A6NNN8 435 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 ENPP3O14638 875 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 INPP4BO15327 924 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 C1RP00736 705 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 ENO2P09104 434 aaPredicted RBP12.64□□□□□ -0.39
LINC00540-203ENST00000631321 SLC10A3P09131 477 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 GNAO1P09471 354 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 CDK4P11802 303 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 IL12AP29459 219 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 SLC11A2P49281 568 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 IL2P60568 153 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 EMX2Q04743 252 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 AASDHQ4L235 1098 aaPredicted RBP12.64□□□□□ -0.39
LINC00540-203ENST00000631321 PSAPL1Q6NUJ1 521 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 PRR23BQ6ZRT6 265 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 SIDT2Q8NBJ9 832 aaKnown RBP12.64□□□□□ -0.39
LINC00540-203ENST00000631321 DNAJB14Q8TBM8 379 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 DIS3LQ8TF46 1054 aaKnown RBP12.64□□□□□ -0.39
LINC00540-203ENST00000631321 SEPT8Q92599 483 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 ISG20Q96AZ6 181 aaKnown RBP12.64□□□□□ -0.39
LINC00540-203ENST00000631321 B3GALT6Q96L58 329 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 SPON2Q9BUD6 331 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 HEBP1Q9NRV9 189 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 ANAPC2Q9UJX6 822 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 AGO1Q9UL18 857 aaKnown RBP12.64□□□□□ -0.39
LINC00540-203ENST00000631321 RAI2Q9Y5P3 530 aa12.64□□□□□ -0.39
LINC00540-203ENST00000631321 ZNF701M0R085 212 aaPredicted RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 OR1I1O60431 355 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 NIPSNAP2O75323 286 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 BAIAP3O94812 1187 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 MTHFD1P11586 935 aaKnown RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 MC4RP32245 332 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 RPS24P62847 133 aaKnown RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 GPR162Q16538 588 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 RBBP7Q16576 425 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 C6orf136Q5SQH8 315 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 RGMBQ6NW40 437 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 LPCAT2Q7L5N7 544 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 ZFAND4Q86XD8 727 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 PROSER1Q86XN7 944 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 TTC30BQ8N4P2 665 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 LPCAT1Q8NF37 534 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 EEF1AKMT1Q8WVE0 214 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 EZH1Q92800 747 aaPredicted RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 LINGO1Q96FE5 620 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 PLEKHG4BQ96PX9 1271 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 ACOX2Q99424 681 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 RRAGCQ9HB90 399 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 NUDT4Q9NZJ9 180 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 FKBPLQ9UIM3 349 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 RNF103-CHMP3A0A140T963 221 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 NCF1BA6NI72 391 aaPredicted RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 NCF1CA8MVU1 366 aaPredicted RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 TPST1O60507 370 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 NCF1P14598 390 aaPredicted RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 ATP5C1P36542 298 aaKnown RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 CDH15P55291 814 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 HPCAP84074 193 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 DUSP4Q13115 394 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 AARS2Q5JTZ9 985 aaKnown RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 NANOGP8Q6NSW7 305 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 TTC33Q6PID6 262 aaPredicted RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 Q6ZSR9 355 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 CHST9Q7L1S5 443 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 B4GALNT2Q8NHY0 566 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 PROKR1Q8TCW9 393 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 GIPC2Q8TF65 315 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 GAB3Q8WWW8 586 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 PDLIM5Q96HC4 596 aaKnown RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 CEP295NLQ96MC4 621 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 SMIM14Q96QK8 99 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 TRIM8Q9BZR9 551 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 MUC3BQ9H195 1237 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 ELAC1Q9H777 363 aaKnown RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 NANOGQ9H9S0 305 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 EIF2B4Q9UI10 523 aaKnown RBP12.63□□□□□ -0.39
LINC00540-203ENST00000631321 ASB1Q9Y576 335 aa12.63□□□□□ -0.39
LINC00540-203ENST00000631321 ANKRD66B4E2M5 251 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 ARNTLO00327 626 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 ESR1P03372 595 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms