RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 AARS2Q5JTZ9 985 aaKnown RBP20.37■□□□□ 0.85
VPS53-210ENST00000571456 LYPLAL1Q5VWZ2 237 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 CASC4Q6P4E1 433 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 CERS6Q6ZMG9 384 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 PELI3Q8N2H9 469 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 DDHD1Q8NEL9 900 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 OR13J1Q8NGT2 312 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 GABPB2Q8TAK5 448 aaPredicted RBP20.37■□□□□ 0.85
VPS53-210ENST00000571456 ZNF514Q96K75 400 aaPredicted RBP20.37■□□□□ 0.85
VPS53-210ENST00000571456 CDC6Q99741 560 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 LRRC1Q9BTT6 524 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 CARD6Q9BX69 1037 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 CHRAC1Q9NRG0 131 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 FAM114A2Q9NRY5 505 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 TM7SF3Q9NS93 570 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 TREX1Q9NSU2 369 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 DNAJC28Q9NX36 388 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 SPASTQ9UBP0 616 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 CSNK1G3Q9Y6M4 447 aa20.37■□□□□ 0.85
VPS53-210ENST00000571456 TDRD6O60522 2096 aaKnown RBP20.36■□□□□ 0.85
VPS53-210ENST00000571456 FAM149AA5PLN7 773 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 KLHL33A6NCF5 533 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 CFAP99D6REC4 459 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 GAPDHSO14556 408 aaPredicted RBP20.36■□□□□ 0.85
VPS53-210ENST00000571456 USP1O94782 785 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 POLBP06746 335 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 RALBP11234 206 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 JUNDP17535 347 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 EPHA8P29322 1005 aaPredicted RBP20.36■□□□□ 0.85
VPS53-210ENST00000571456 TERF1P54274 439 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 EIF2B5Q13144 721 aaKnown RBP20.36■□□□□ 0.85
VPS53-210ENST00000571456 LRP8Q14114 963 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 KIAA0930Q6ICG6 404 aaPredicted RBP20.36■□□□□ 0.85
VPS53-210ENST00000571456 TMEM135Q86UB9 458 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 LMNTD2Q8IXW0 634 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 PHACTR4Q8IZ21 702 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 MPP5Q8N3R9 675 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 STAMBPL1Q96FJ0 436 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 SIGLEC10Q96LC7 697 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 TTC25Q96NG3 672 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 LGR4Q9BXB1 951 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 TSPYL1Q9H0U9 437 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 TRNAU1APQ9NX07 287 aaKnown RBP20.36■□□□□ 0.85
VPS53-210ENST00000571456 CRLS1Q9UJA2 301 aa20.36■□□□□ 0.85
VPS53-210ENST00000571456 TRBV5-4A0A0C4DH59 114 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 PRSS38A1L453 326 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 TMEM202A6NGA9 273 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 F8W8V4 182 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 PFDN6O15212 129 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 INPP4BO15327 924 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 AVILO75366 819 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 CEACAM5P06731 702 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 PGAM1P18669 254 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 TMPRSS15P98073 1019 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 GTF2H3Q13889 308 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 ELOCQ15369 112 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 ALG11Q2TAA5 492 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 TPRG1LQ5T0D9 272 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 DBX2Q6ZNG2 339 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 CENPUQ71F23 418 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 LURAP1LQ8IV03 231 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 NXPE1Q8N323 547 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 OR4L1Q8NH43 312 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 GDAP1Q8TB36 358 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 ART4Q93070 314 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 FCRL3Q96P31 734 aaPredicted RBP20.35■□□□□ 0.85
VPS53-210ENST00000571456 DPH5Q9H2P9 285 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 FGF22Q9HCT0 170 aa20.35■□□□□ 0.85
VPS53-210ENST00000571456 APOBEC3BQ9UH17 382 aaKnown RBP20.35■□□□□ 0.85
VPS53-210ENST00000571456 FNDC3AQ9Y2H6 1198 aaKnown RBP20.35■□□□□ 0.85
VPS53-210ENST00000571456 E7ESA3 106 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 QSOX1O00391 747 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 FLRT2O43155 660 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 NUAK1O60285 661 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 KCNJ13O60928 360 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 ASMTLO95671 621 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 CTSEP14091 401 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 ITIH4Q14624 930 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 PTPRCAPQ14761 206 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 LVRNQ6Q4G3 990 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 LRRC69Q6ZNQ3 347 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 GALNT13Q8IUC8 556 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 HID1Q8IV36 788 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 NOA1Q8NC60 698 aaKnown RBP20.34■□□□□ 0.85
VPS53-210ENST00000571456 RHBDD1Q8TEB9 315 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 SAP25Q8TEE9 199 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 HDAC10Q969S8 669 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 COPS8Q99627 209 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 EBNA1BP2Q99848 306 aaKnown RBP20.34■□□□□ 0.85
VPS53-210ENST00000571456 IL21RQ9HBE5 538 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 GRHL1Q9NZI5 618 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 GPR34Q9UPC5 381 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 MAD1L1Q9Y6D9 718 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 RPS6KL1Q9Y6S9 549 aa20.34■□□□□ 0.85
VPS53-210ENST00000571456 TPP1O14773 563 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 CHUKO15111 745 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 TP73O15350 636 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 PIAS2O75928 621 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 ALPPL2P10696 532 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 CRADDP78560 199 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms