RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SERPINI2O75830 405 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 DCTN3O75935 186 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 SUN1O94901 812 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 OR6B1O95007 311 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ZFPL1O95159 310 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 VNN1O95497 513 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 AFPP02771 609 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 ASNSP08243 561 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 IFIT1P09914 478 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 ZCCHC18P0CG32 403 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 PF4V1P10720 104 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 SLC2A3P11169 496 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 APEHP13798 732 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 AKR1B1P15121 316 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 GJA1P17302 382 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ITGALP20701 1170 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 PROZP22891 400 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 RRM2P31350 389 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TTKP33981 857 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 SERPINB5P36952 375 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 HNF4AP41235 474 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 OR1G1P47890 313 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TM4SF4P48230 202 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ENTPD1P49961 510 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CASP5P51878 434 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 RAP1GDS1P52306 607 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CACNB3P54284 484 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 HAND2P61296 217 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 POU6F2P78424 691 aaPredicted RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 BLOC1S1P78537 153 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 GALK2Q01415 458 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CDR2Q01850 454 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 DSC2Q02487 901 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CREB5Q02930 508 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 PIGFQ07326 219 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 FOXI1Q12951 378 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 DLG1Q12959 904 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 RAPSNQ13702 412 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 APOFQ13790 326 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 GIT2Q14161 759 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 KRT81Q14533 505 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 FASTKD3Q14CZ7 662 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 OXA1LQ15070 435 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 PGS1Q32NB8 556 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CD300EQ496F6 205 aaPredicted RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 TNFAIP8L3Q5GJ75 292 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ZNF569Q5MCW4 686 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TCHHL1Q5QJ38 904 aaPredicted RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 THEM4Q5T1C6 240 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 STRIP1Q5VSL9 837 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TAPT1Q6NXT6 567 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 AAGABQ6PD74 315 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TRIM72Q6ZMU5 477 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 STXBP4Q6ZWJ1 553 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 USP45Q70EL2 814 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 FRA10AC1Q70Z53 315 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 HDDC2Q7Z4H3 204 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 HEATR3Q7Z4Q2 680 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CLNKQ7Z7G1 428 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 SETD3Q86TU7 594 aaPredicted RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 LRRC6Q86X45 466 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 DGKHQ86XP1 1220 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 GRAMD1CQ8IYS0 662 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CLYBLQ8N0X4 340 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CLEC4FQ8N1N0 589 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ZNF619Q8N2I2 560 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 DPP10Q8N608 796 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ARFGAP1Q8N6T3 406 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TSPYL6Q8N831 410 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ASCC1Q8N9N2 400 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 PDPRQ8NCN5 879 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CATSPER1Q8NEC5 780 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ZNF461Q8TAF7 563 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TTC8Q8TAM2 541 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 LRRC20Q8TCA0 184 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 MCOLN3Q8TDD5 553 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 UTP15Q8TED0 518 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 DENND1AQ8TEH3 1009 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 SCFD1Q8WVM8 642 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 KRT35Q92764 455 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 C19orf60Q96EN9 201 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ZDHHC12Q96GR4 267 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TXNDC15Q96J42 360 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 PLEKHA8Q96JA3 519 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 RADILQ96JH8 1075 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 B3GALT6Q96L58 329 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 LRGUKQ96M69 825 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 COQ10AQ96MF6 247 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CCDC43Q96MW1 224 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 TWNKQ96RR1 684 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CRAMP1Q96RY5 1269 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 PLEKHF1Q96S99 279 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 DMRTA2Q96SC8 542 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 SMOQ99835 787 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ECSITQ9BQ95 431 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 EIF2AK1Q9BQI3 630 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 ZSCAN5AQ9BUG6 496 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 DDX23Q9BUQ8 820 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 C1orf43Q9BWL3 253 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TDRD1Q9BXT4 1180 aaKnown RBP3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms