RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 IPMKQ8NFU5 416 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 SLC38A3Q99624 504 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 FAM118BQ9BPY3 351 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 TIMM29Q9BSF4 260 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 SPRY4Q9C004 299 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 UCK1Q9HA47 277 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 KLC4Q9NSK0 619 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 OGFRQ9NZT2 677 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 HACD3Q9P035 362 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 CPNE7Q9UBL6 633 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 TRIM10Q9UDY6 481 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 RSPH14Q9UHP6 348 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 AHCTF1Q8WYP5 2266 aa14.66□□□□□ -0.06
CLN3-213ENST00000565047 H7C0C1 242 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 KMOO15229 486 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 UGT1A9O60656 530 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 CDK14O94921 469 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 LIPCP11150 499 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 UGT1A6P19224 532 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 UGT1A1P22309 533 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 UGT1A4P22310 534 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 CDC25BP30305 580 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 UGT1A3P35503 534 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 SLC19A1P41440 591 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 ATP5OP48047 213 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 EPHA4P54764 986 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 KLF1Q13351 362 aaPredicted RBP14.65□□□□□ -0.06
CLN3-213ENST00000565047 OLIG2Q13516 323 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 CHRNA6Q15825 494 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 XKR5Q6UX68 686 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 WASH2PQ6VEQ5 465 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 SLC9B2Q86UD5 537 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 LRRTM4Q86VH4 590 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 ZFAND4Q86XD8 727 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 SLC39A7Q92504 469 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 WBP1Q96G27 269 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 CCNL2Q96S94 520 aaPredicted RBP14.65□□□□□ -0.06
CLN3-213ENST00000565047 UGT1A7Q9HAW7 530 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 UGT1A10Q9HAW8 530 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 UGT1A8Q9HAW9 530 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 WASH6PQ9NQA3 447 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 OCIAD1Q9NX40 245 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 IMPACTQ9P2X3 320 aa14.65□□□□□ -0.06
CLN3-213ENST00000565047 LILRA5A6NI73 299 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 AGAP14A8MT82 685 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 B4E171 279 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 ERVH48-1M5A8F1 160 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 BUD23O43709 281 aaKnown RBP14.64□□□□□ -0.07
CLN3-213ENST00000565047 SNX2O60749 519 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 PPFIA2O75334 1257 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 PRB1P04280 392 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 WT1P19544 449 aaPredicted RBP14.64□□□□□ -0.07
CLN3-213ENST00000565047 SPAM1P38567 509 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 TSPAN7P41732 249 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 MAPK10P53779 464 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 EIF3EP60228 445 aaKnown RBP14.64□□□□□ -0.07
CLN3-213ENST00000565047 NFATC2Q13469 925 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 AGAP9Q5VTM2 703 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 ZDHHC20Q5W0Z9 365 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 CRTC3Q6UUV7 619 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 GLT6D1Q7Z4J2 308 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 JAMLQ86YT9 394 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 RASGEF1AQ8N9B8 481 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 AGBL5Q8NDL9 886 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 DDHD1Q8NEL9 900 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 OR10G6Q8NH81 332 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 BLOC1S5Q8TDH9 187 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 SH3KBP1Q96B97 665 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 TAAR9Q96RI9 348 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 TBC1D10AQ9BXI6 508 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 ARNT2Q9HBZ2 717 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 SMOXQ9NWM0 555 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.64□□□□□ -0.07
CLN3-213ENST00000565047 PACSIN2Q9UNF0 486 aaPredicted RBP14.64□□□□□ -0.07
CLN3-213ENST00000565047 WDR37Q9Y2I8 494 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 SLC30A1Q9Y6M5 507 aa14.64□□□□□ -0.07
CLN3-213ENST00000565047 CFAP46Q8IYW2 2715 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 C5orf60A6NFR6 353 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 SGTAO43765 313 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 ANXA9O76027 345 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 TJP3O95049 919 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 IPO7O95373 1038 aaKnown RBP14.63□□□□□ -0.07
CLN3-213ENST00000565047 SLC2A4P14672 509 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 CD82P27701 267 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 PSMB4P28070 264 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 CTSCP53634 463 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 GEMP55040 296 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 XIAPP98170 497 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 RHDQ02161 417 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 DMPKQ09013 629 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 BIRC2Q13490 618 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 CLCA4Q14CN2 919 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 TAF1AQ15573 450 aaPredicted RBP14.63□□□□□ -0.07
CLN3-213ENST00000565047 PLA2G4EQ3MJ16 856 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 KCTD11Q693B1 232 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 FAM151BQ6UXP7 276 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 CCDC81Q6ZN84 652 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 CDKL3Q8IVW4 592 aaPredicted RBP14.63□□□□□ -0.07
CLN3-213ENST00000565047 CCDC110Q8TBZ0 833 aa14.63□□□□□ -0.07
CLN3-213ENST00000565047 BRSK1Q8TDC3 778 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms