RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 LRRC57Q8N9N7 239 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 LSM14AQ8ND56 463 aaKnown RBP16.62■□□□□ 0.25
CLK3-210ENST00000563112 AGBL5Q8NDL9 886 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 RCBTB1Q8NDN9 531 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 LRRC45Q96CN5 670 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 BBC3Q96PG8 261 aaPredicted RBP16.62■□□□□ 0.25
CLK3-210ENST00000563112 PPP1R2P1Q96PQ5 205 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 TIMM29Q9BSF4 260 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 FICDQ9BVA6 458 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 ZCCHC2Q9C0B9 1178 aaKnown RBP16.62■□□□□ 0.25
CLK3-210ENST00000563112 B3GNT4Q9C0J1 378 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 EPB41L1Q9H4G0 881 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 PRDM8Q9NQV8 689 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 IL17CQ9P0M4 197 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 CPNE7Q9UBL6 633 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 SSUH2Q9Y2M2 353 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 PCDHB11Q9Y5F2 797 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 SCN8AQ9UQD0 1980 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 PRAMEF33A0A0G2JMD5 474 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 GLYATL1P3A0A0U1RQE8 302 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 GRID2IPA4D2P6 1211 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 A6NCN8 305 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 MIF4GDA9UHW6 222 aaKnown RBP16.61■□□□□ 0.25
CLK3-210ENST00000563112 ATXN7O15265 892 aaPredicted RBP16.61■□□□□ 0.25
CLK3-210ENST00000563112 STX7O15400 261 aaKnown RBP16.61■□□□□ 0.25
CLK3-210ENST00000563112 PRAMEF10O60809 474 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 MTX2O75431 263 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 AGTP01019 485 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 LIPCP11150 499 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 PYGMP11217 842 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 IDSP22304 550 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 ETV5P41161 510 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 TMEM115Q12893 351 aaPredicted RBP16.61■□□□□ 0.25
CLK3-210ENST00000563112 ITGA9Q13797 1035 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 PLA2G4EQ3MJ16 856 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 ANKRD20A2Q5SQ80 823 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 ANKRD20A1Q5TYW2 823 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 ANKRD20A3Q5VUR7 823 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 TRIM48Q8IWZ4 208 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 TTC13Q8NBP0 860 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 SPC24Q8NBT2 197 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 ALG3Q92685 438 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 TAAR9Q96RI9 348 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 CCNL2Q96S94 520 aaPredicted RBP16.61■□□□□ 0.25
CLK3-210ENST00000563112 IL26Q9NPH9 171 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 DNAJC16Q9Y2G8 782 aa16.61■□□□□ 0.25
CLK3-210ENST00000563112 FASNP49327 2511 aaKnown RBP16.61■□□□□ 0.25
CLK3-210ENST00000563112 C2orf81A6NN90 581 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 PDZK1P1A8MUH7 402 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 TK2O00142 265 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 KCNJ13O60928 360 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 VIPP01282 170 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 THRAP10827 490 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 CCL4P13236 92 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 XRCC1P18887 633 aaPredicted RBP16.6■□□□□ 0.25
CLK3-210ENST00000563112 MPSTP25325 297 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 CSF2RBP32927 897 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 MAPK9P45984 424 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 CHRNA6Q15825 494 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 LDLRAP1Q5SW96 308 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 WDR74Q6RFH5 385 aaPredicted RBP16.6■□□□□ 0.25
CLK3-210ENST00000563112 FAM151BQ6UXP7 276 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 TRAPPC5Q8IUR0 188 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 SLC39A7Q92504 469 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 NCSTNQ92542 709 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 SPATA13Q96N96 652 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 SLC23A2Q9UGH3 650 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 TMPRSS11EQ9UL52 423 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 MGAQ8IWI9 3026 aa16.6■□□□□ 0.25
CLK3-210ENST00000563112 C5orf60A6NFR6 353 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 K7ENP7 123 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 BUD23O43709 281 aaKnown RBP16.59■□□□□ 0.25
CLK3-210ENST00000563112 UGT1A9O60656 530 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 UGT1A6P19224 532 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 LPOP22079 712 aaPredicted RBP16.59■□□□□ 0.25
CLK3-210ENST00000563112 UGT1A1P22309 533 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 UGT1A4P22310 534 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 PSMB4P28070 264 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 UGT1A3P35503 534 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 CFHR1Q03591 330 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 TAF1BQ53T94 588 aaPredicted RBP16.59■□□□□ 0.25
CLK3-210ENST00000563112 SNAP47Q5SQN1 464 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 AADACL2Q6P093 401 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 INO80CQ6PI98 192 aaPredicted RBP16.59■□□□□ 0.25
CLK3-210ENST00000563112 RANBP10Q6VN20 620 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 ZFAND4Q86XD8 727 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 TMEM139Q8IV31 216 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 SNRNP27Q8WVK2 155 aaKnown RBP16.59■□□□□ 0.25
CLK3-210ENST00000563112 FAM118BQ9BPY3 351 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 DESI2Q9BSY9 194 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 UCK1Q9HA47 277 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 UGT1A7Q9HAW7 530 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 UGT1A10Q9HAW8 530 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 UGT1A8Q9HAW9 530 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 TMEM9Q9P0T7 183 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 PDP2Q9P2J9 529 aa16.59■□□□□ 0.25
CLK3-210ENST00000563112 LILRA5A6NI73 299 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 A8MU76 341 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 C9orf172C9J069 976 aa16.58■□□□□ 0.24
CLK3-210ENST00000563112 ERVH48-1M5A8F1 160 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms