RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 YBEYP58557 167 aaPredicted RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 C6orf136Q5SQH8 315 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 CCSAPQ6IQ19 270 aaPredicted RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 CAMK1DQ8IU85 385 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 CLVS1Q8IUQ0 354 aaPredicted RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 OR6K2Q8NGY2 324 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 CD200R1Q8TD46 325 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 MGME1Q9BQP7 344 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 TANC1Q9C0D5 1861 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 AIG1Q9NVV5 245 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 TCRBV5S2A0A599 114 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 CCDC154A6NI56 674 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 AQP12BA6NM10 295 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 FAM155AB1AL88 458 aaPredicted RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 E2F3O00716 465 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 MAGEB3O15480 346 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 INSIG1O15503 277 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 ESRRBO95718 433 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 EPOP01588 193 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 HRH2P25021 359 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 VARSP26640 1264 aaKnown RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 CLCN2P51788 898 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 TNK2Q07912 1038 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 INPP5AQ14642 412 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 TMEM214Q6NUQ4 689 aaKnown RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 TAS2R42Q7RTR8 314 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 AQP12AQ8IXF9 295 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 TRPV3Q8NET8 790 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 EID2BQ96D98 161 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 PSKH2Q96QS6 385 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 HAUS8Q9BT25 410 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 NAA50Q9GZZ1 169 aaKnown RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 NACA2Q9H009 215 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 SYTL2Q9HCH5 934 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 GID8Q9NWU2 228 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 UBA2Q9UBT2 640 aaPredicted RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 SYNCRIPO60506 623 aaKnown RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 TMCC1O94876 653 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 PRR35P0CG20 571 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 PRKAR2AP13861 404 aaKnown RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 POLR2JP52435 117 aaKnown RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 HPCAP84074 193 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 PPP1R8Q12972 351 aaKnown RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 LRRC23Q53EV4 343 aaPredicted RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 TRAF7Q6Q0C0 670 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 CENPNQ96H22 339 aaPredicted RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 VPS50Q96JG6 964 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 RNF145Q96MT1 663 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 MRGBPQ9NV56 204 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 ZMYM5Q9UJ78 669 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 PADI4Q9UM07 663 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 RAI2Q9Y5P3 530 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 PRRC2BQ5JSZ5 2229 aaKnown RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 SNX2O60749 519 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 G6PDP11413 515 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 CTPS1P17812 591 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 GDF5P43026 501 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 IST1P53990 364 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 EMP3P54852 163 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 XKR7Q5GH72 579 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 ANKRD34AQ69YU3 496 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 BORAQ6PGQ7 559 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 GPSM1Q86YR5 675 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 SFRP1Q8N474 314 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 BIRC7Q96CA5 298 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 ASB2Q96Q27 587 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 TDRD1Q9BXT4 1180 aaKnown RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 A8MX80 341 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 GUCA1CO95843 209 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 PKMP14618 531 aaKnown RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 MAPKAPK2P49137 400 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 OXCT1P55809 520 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 SEMG2Q02383 582 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 TRAF2Q12933 501 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 TGFBIQ15582 683 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 ATP6AP1Q15904 470 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 SLC36A3Q495N2 470 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 CLDN19Q8N6F1 224 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 FAM86B1Q8N7N1 296 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 ACTL8Q9H568 366 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 SCUBE2Q9NQ36 999 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 INTS10Q9NVR2 710 aaKnown RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 SEPT3Q9UH03 358 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 UTS2RQ9UKP6 389 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 AGO1Q9UL18 857 aaKnown RBP12.75□□□□□ -0.37
LDLR-207ENST00000558013 SLC8A2Q9UPR5 921 aa12.75□□□□□ -0.37
LDLR-207ENST00000558013 C5orf42Q9H799 3197 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 MANSC4A6NHS7 340 aaPredicted RBP12.74□□□□□ -0.37
LDLR-207ENST00000558013 CLOCKO15516 846 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 ACSL4O60488 711 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 CAPN1P07384 714 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 ALPIP09923 528 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 TCF3P15923 654 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 CR2P20023 1033 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 RFC2P35250 354 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 CDK9P50750 372 aaKnown RBP12.74□□□□□ -0.37
LDLR-207ENST00000558013 PMS2P3Q13401 168 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 TMEM259Q4ZIN3 620 aa12.74□□□□□ -0.37
LDLR-207ENST00000558013 RFTN2Q52LD8 501 aaPredicted RBP12.74□□□□□ -0.37
LDLR-207ENST00000558013 CYBRD1Q53TN4 286 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms