RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 AGAP14A8MT82 685 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 CDK14O94921 469 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 AGTP01019 485 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 ZNF7P17097 686 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 XRCC1P18887 633 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 LPOP22079 712 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 ALDH4A1P30038 563 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 P3H1Q32P28 736 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 DENND5AQ6IQ26 1287 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 WDR74Q6RFH5 385 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 ABRAXAS1Q6UWZ7 409 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 ZNF574Q6ZN55 896 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 C11orf96Q7Z7L8 435 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 SLC9B2Q86UD5 537 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 KCNE4Q8WWG9 221 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 NUDT22Q9BRQ3 303 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 BPIFA1Q9NP55 256 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 KCNK4Q9NYG8 393 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 LOXL2Q9Y4K0 774 aa15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 DNMT3AQ9Y6K1 912 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-209ENST00000554872 IGHV5-10-1A0A0J9YXX1 117 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 F5H423 210 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 STX7O15400 261 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 DUX1O43812 170 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 CRTAMO95727 393 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 THRAP10827 490 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 VCLP18206 1134 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 CD82P27701 267 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 CSF2RBP32927 897 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 TMEM115Q12893 351 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 CHRNA6Q15825 494 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 TMEM71Q6P5X7 295 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 RBM12BQ8IXT5 1001 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 OR10G6Q8NH81 332 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 ZNF514Q96K75 400 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 FAM118BQ9BPY3 351 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 SEMA6CQ9H3T2 930 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 RDH14Q9HBH5 336 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 KLC4Q9NSK0 619 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 AKAP7Q9P0M2 348 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 CPNE7Q9UBL6 633 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 SLC23A2Q9UGH3 650 aa15.81■□□□□ 0.12
CCDC88C-209ENST00000554872 CACNA1GO43497 2377 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 PTMAP06454 111 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 JMJD7P0C870 316 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 PSMA3P25788 255 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 STIP1P31948 543 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 ZNF140P52738 457 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 CFHR1Q03591 330 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 CCDC173Q0VFZ6 552 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 GTF2H3Q13889 308 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 C16orf72Q14CZ0 275 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 OASLQ15646 514 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 INSCQ1MX18 579 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 AMZ1Q400G9 498 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 ZNF648Q5T619 568 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 GPRC6AQ5T6X5 926 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 BROXQ5VW32 411 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 FAM151BQ6UXP7 276 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 ARHGEF18Q6ZSZ5 1173 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 FAM71DQ8N9W8 422 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 SLC38A3Q99624 504 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 TBL1YQ9BQ87 522 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 LRRC40Q9H9A6 602 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 ARFGAP3Q9NP61 516 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 POT1Q9NUX5 634 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 R3HDM2Q9Y2K5 976 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 PCDHGA3Q9Y5H0 932 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 ARL5AQ9Y689 179 aa15.8■□□□□ 0.12
CCDC88C-209ENST00000554872 TCRBV7S2A1N4TA0A589 114 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 ERI2A8K979 691 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 H7C0S8 307 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 PSMD3O43242 534 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 MTX2O75431 263 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 PRAMEF1O95521 474 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 AP2A1O95782 977 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 CCDC175P0C221 793 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 SLC5A2P31639 672 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 HADHAP40939 763 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 TMPRSS3P57727 454 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 XIAPP98170 497 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 NFATC2Q13469 925 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 PHF19Q5T6S3 580 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 SEL1L2Q5TEA6 688 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 MEI1Q5TIA1 1274 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 CRTC3Q6UUV7 619 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 USP53Q70EK8 1073 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 TRAPPC5Q8IUR0 188 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 LRRC8AQ8IWT6 810 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 RASGEF1AQ8N9B8 481 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 AGBL5Q8NDL9 886 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 OR4K2Q8NGD2 314 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 CCDC74BQ96LY2 380 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 TTC25Q96NG3 672 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 PRDM8Q9NQV8 689 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 GUCA1BQ9UMX6 200 aa15.79■□□□□ 0.12
CCDC88C-209ENST00000554872 MN1Q10571 1320 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 LDB2O43679 373 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms