RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ARL10Q8N8L6 244 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 MCUQ8NE86 351 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 GPR156Q8NFN8 814 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 PATE1Q8WXA2 126 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 ZNF592Q92610 1267 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 GLMNQ92990 594 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 HDAC10Q969S8 669 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 ULK4Q96C45 1275 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 TTC25Q96NG3 672 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 RUNDC3BQ96NL0 473 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 SERPINB12Q96P63 405 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 IL22Q9GZX6 179 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 SLC23A2Q9UGH3 650 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 RIMKLBQ9ULI2 386 aa13.93□□□□□ -0.18
PTCH1-226ENST00000553011 OR2AG2A6NM03 316 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 KMOO15229 486 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 URI1O94763 535 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 EML2O95834 649 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 GOT2P00505 430 aaKnown RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 ZNF7P17097 686 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 NMBRP28336 390 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 FOXN2P32314 431 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 DUSP3P51452 185 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 MAZP56270 477 aaKnown RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 B4GALNT1Q00973 533 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 CACNG1Q06432 222 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 DHX34Q14147 1143 aaKnown RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 INSCQ1MX18 579 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 GPR33Q49SQ1 333 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 PERM1Q5SV97 790 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 IZUMO3Q5VZ72 239 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 TMEM220Q6QAJ8 160 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 CES3Q6UWW8 571 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 DHRS13Q6UX07 377 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 SYDE1Q6ZW31 735 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 DET1Q7L5Y6 550 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 EFL1Q7Z2Z2 1120 aaKnown RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 C11orf96Q7Z7L8 435 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 SERPINA9Q86WD7 417 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 CHCHD4Q8N4Q1 142 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 IFI44Q8TCB0 444 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 ZDHHC1Q8WTX9 485 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 ADAMTS14Q8WXS8 1223 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 ZCCHC2Q9C0B9 1178 aaKnown RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 XAB2Q9HCS7 855 aaKnown RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 KLC4Q9NSK0 619 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 TREX1Q9NSU2 369 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 NCKIPSDQ9NZQ3 722 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 CDC23Q9UJX2 597 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 PADI4Q9UM07 663 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 DNAJC16Q9Y2G8 782 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 PCDHGA1Q9Y5H4 931 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 COL27A1Q8IZC6 1860 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-226ENST00000553011 AKAP13Q12802 2813 aa13.92□□□□□ -0.18
PTCH1-226ENST00000553011 SPEGQ15772 3267 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 EME2A4GXA9 379 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-226ENST00000553011 HYAL3O43820 417 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-226ENST00000553011 MLNP12872 115 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 ACRV1P26436 265 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 PMLP29590 882 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 RPIAP49247 311 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 CLDN6P56747 220 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 DBN1Q16643 649 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 AFTPHQ6ULP2 937 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 RAB44Q7Z6P3 723 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-226ENST00000553011 NAGSQ8N159 534 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 AGGF1Q8N302 714 aaeCLIP13.91□□□□□ -0.18
PTCH1-226ENST00000553011 BEND7Q8N7W2 519 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-226ENST00000553011 OR6P1Q8NGX9 317 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 PEX13Q92968 403 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 MFSD3Q96ES6 412 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 SGF29Q96ES7 293 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 COPS8Q99627 209 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 TRIM56Q9BRZ2 755 aaKnown RBP13.91□□□□□ -0.18
PTCH1-226ENST00000553011 TIMM29Q9BSF4 260 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 KIFC1Q9BW19 673 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 TRIM31Q9BZY9 425 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 OSGEPL1Q9H4B0 414 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 EVA1BQ9NVM1 165 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 ZDHHC3Q9NYG2 299 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 TBC1D29Q9UFV1 150 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 SOX13Q9UN79 622 aa13.91□□□□□ -0.18
PTCH1-226ENST00000553011 ACACBO00763 2458 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 IGLV3-16A0A075B6K0 115 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 TRBV23OR9-2A0A075B6M9 112 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 CASC3O15234 703 aaKnown RBP13.9□□□□□ -0.18
PTCH1-226ENST00000553011 RAD51CO43502 376 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 SGTAO43765 313 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 SNX2O60749 519 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 POP7O75817 140 aaKnown RBP13.9□□□□□ -0.18
PTCH1-226ENST00000553011 SPINK2P20155 84 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 PBLDP30039 288 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-226ENST00000553011 MAGEA3P43357 314 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 PRAMEP78395 509 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 ILKQ13418 452 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 HLTFQ14527 1009 aaKnown RBP eCLIP13.9□□□□□ -0.18
PTCH1-226ENST00000553011 SEMA3AQ14563 771 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 SMAD1Q15797 465 aaKnown RBP13.9□□□□□ -0.18
PTCH1-226ENST00000553011 C14orf28Q4W4Y0 310 aa13.9□□□□□ -0.18
PTCH1-226ENST00000553011 FNBP1LQ5T0N5 605 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms