RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 RTP4Q96DX8 246 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 FCRL5Q96RD9 977 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 HEMGNQ9BXL5 484 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 SLC12A9Q9BXP2 914 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 TRIM5Q9C035 493 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 ZMYND15Q9H091 742 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 APMAPQ9HDC9 416 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 KLHL3Q9UH77 587 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 PILRAQ9UKJ1 303 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 ZNF462Q96JM2 2506 aa13.15□□□□□ -0.3
CPSF6-204ENST00000547486 HELZ2Q9BYK8 2649 aaKnown RBP13.14□□□□□ -0.31
CPSF6-204ENST00000547486 RCCD1A6NED2 376 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 OR5K4A6NMS3 321 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 PYCARD-AS1I3L0S3 204 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 GPR39O43194 453 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 BUD23O43709 281 aaKnown RBP13.14□□□□□ -0.31
CPSF6-204ENST00000547486 VEGFDO43915 354 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 UGT1A9O60656 530 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 EPOP01588 193 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 SLC2A4P14672 509 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 LIFP15018 202 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 TYRP1P17643 537 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 ITGB6P18564 788 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 UGT1A6P19224 532 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 UGT1A1P22309 533 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 UGT1A4P22310 534 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 RPL10P27635 214 aaKnown RBP13.14□□□□□ -0.31
CPSF6-204ENST00000547486 GFERP55789 205 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 TMEM115Q12893 351 aaPredicted RBP13.14□□□□□ -0.31
CPSF6-204ENST00000547486 PTPRCAPQ14761 206 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 SLC1A5Q15758 541 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 CHRNA6Q15825 494 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 INSCQ1MX18 579 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 SARM1Q6SZW1 724 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 TMEM26Q6ZUK4 368 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 TIPARPQ7Z3E1 657 aaKnown RBP13.14□□□□□ -0.31
CPSF6-204ENST00000547486 LRRTM4Q86VH4 590 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 ZSCAN1Q8NBB4 408 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 CCDC112Q8NEF3 446 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 VPS35Q96QK1 796 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 SRPK1Q96SB4 655 aaKnown RBP13.14□□□□□ -0.31
CPSF6-204ENST00000547486 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.14□□□□□ -0.31
CPSF6-204ENST00000547486 ASPSCR1Q9BZE9 553 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 STN1Q9H668 368 aaKnown RBP13.14□□□□□ -0.31
CPSF6-204ENST00000547486 UCK1Q9HA47 277 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 UGT1A7Q9HAW7 530 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 UGT1A10Q9HAW8 530 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 UGT1A8Q9HAW9 530 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 FBXO8Q9NRD0 319 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 IL17CQ9P0M4 197 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 KLHL8Q9P2G9 620 aaPredicted RBP13.14□□□□□ -0.31
CPSF6-204ENST00000547486 TRIM10Q9UDY6 481 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 WDR37Q9Y2I8 494 aa13.14□□□□□ -0.31
CPSF6-204ENST00000547486 BOD1L1Q8NFC6 3051 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 PIEZO2Q9H5I5 2752 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 SDK2Q58EX2 2172 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 LILRA5A6NI73 299 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 OR52A4PA6NMU1 304 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 PDZK1P1A8MUH7 402 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 GAPDHSO14556 408 aaPredicted RBP13.13□□□□□ -0.31
CPSF6-204ENST00000547486 RAD1O60671 282 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 AGTP01019 485 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 DRG2P55039 364 aaKnown RBP13.13□□□□□ -0.31
CPSF6-204ENST00000547486 RAB15P59190 212 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 CLCA4Q14CN2 919 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 ABRAXAS1Q6UWZ7 409 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 BBS12Q6ZW61 710 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 CCDC50Q8IVM0 306 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 CACNA2D3Q8IZS8 1091 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 IL22RA1Q8N6P7 574 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 RASGEF1AQ8N9B8 481 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 IPMKQ8NFU5 416 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 C9orf72Q96LT7 481 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 QKIQ96PU8 341 aaKnown RBP eCLIP13.13□□□□□ -0.311e-6■■■■■ 27.4
CPSF6-204ENST00000547486 GORASP1Q9BQQ3 440 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 TIMM29Q9BSF4 260 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 TRABDQ9H4I3 376 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 SLC40A1Q9NP59 571 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 DUSP10Q9Y6W6 482 aa13.13□□□□□ -0.31
CPSF6-204ENST00000547486 J3QKU1 62 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 MTSS1O43312 755 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 UBXN7O94888 489 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 VIPP01282 170 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 C9P02748 559 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 RBL1P28749 1068 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 LEPRP48357 1165 aaKnown RBP13.12□□□□□ -0.31
CPSF6-204ENST00000547486 ATP1A2P50993 1020 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 CTSCP53634 463 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 NFATC3Q12968 1075 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 AGAP9Q5VTM2 703 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 C11orf63Q6NUN7 778 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 FAM151BQ6UXP7 276 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 WASH2PQ6VEQ5 465 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 CCDC170Q8IYT3 715 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 UNC5BQ8IZJ1 945 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 GDAP1Q8TB36 358 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 DTX3LQ8TDB6 740 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 BLOC1S5Q8TDH9 187 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 RNF31Q96EP0 1072 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 TGM7Q96PF1 710 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms