RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	XKR8	Q9H6D3	395 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	MARCH7	Q9H992	704 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	PPCS	Q9HAB8	311 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	CPNE5	Q9HCH3	593 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	RAVER2	Q9HCJ3	691 aa	Known RBP	5.63	□□□□□ -1.51
CD44-231	ENST00000531110	TUFT1	Q9NNX1	390 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	MRGBP	Q9NV56	204 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	HYPK	Q9NX55	129 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	RSL24D1	Q9UHA3	163 aa	Known RBP	5.63	□□□□□ -1.51
CD44-231	ENST00000531110	NARF	Q9UHQ1	456 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	ERGIC3	Q9Y282	383 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	MAD1L1	Q9Y6D9	718 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	RTL9	Q8NET4	1388 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	ABCC5	O15440	1437 aa		5.63	□□□□□ -1.51
CD44-231	ENST00000531110	MAGI1	Q96QZ7	1491 aa	Predicted RBP	5.63	□□□□□ -1.51
CD44-231	ENST00000531110	SUPT6H	Q7KZ85	1726 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	POLR2A	P24928	1970 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110		A0A087WZ62	844 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	LOC390937	A0A1W2PQ73	354 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110		A6NCN8	305 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	SMCO2	A6NFE2	343 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	ZSCAN5B	A6NJL1	495 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	PRSS44	E7EML9	344 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110		H3BNX3	289 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	RTCA	O00442	366 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	HNRNPDL	O14979	420 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	KCNN4	O15554	427 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	AQP9	O43315	295 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	PMPCB	O75439	489 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	CDK14	O94921	469 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	WDPCP	O95876	746 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	IL6	P05231	212 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	HOXB8	P17481	243 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	RPS6KB1	P23443	525 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	CHM	P24386	653 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	RBL1	P28749	1068 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	PBLD	P30039	288 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	HNF4A	P41235	474 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	GARS	P41250	739 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	PRCP	P42785	496 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	PTPN9	P43378	593 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	ATP5O	P48047	213 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	ME1	P48163	572 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	RAD23B	P54727	409 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	DCDC1	P59894	354 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	EEF1A1	P68104	462 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	EEF1A2	Q05639	463 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	RNASEL	Q05823	741 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	TBX2	Q13207	712 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	TRPC3	Q13507	836 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	DUSP7	Q16829	419 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	LRRC36	Q1X8D7	754 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	GTDC1	Q4AE62	458 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	CEP55	Q53EZ4	464 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	FAM209B	Q5JX69	171 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	EEF1A1P5	Q5VTE0	462 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	MRNIP	Q6NTE8	343 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	ERAP2	Q6P179	960 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	SYCE2	Q6PIF2	218 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	DCDC5	Q6ZRR9	648 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	USP43	Q70EL4	1123 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	HAUS6	Q7Z4H7	955 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	SLFN11	Q7Z7L1	901 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	ASPG	Q86U10	573 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	RHPN2	Q8IUC4	686 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	SLC38A6	Q8IZM9	456 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	CCNYL1	Q8N7R7	359 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	TSPYL6	Q8N831	410 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	SPATA5	Q8NB90	893 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	ZNF461	Q8TAF7	563 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	ADAMTS16	Q8TE57	1224 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	DENND1A	Q8TEH3	1009 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	MYDGF	Q969H8	173 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	VPS33A	Q96AX1	596 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	RAD51AP1	Q96B01	352 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	CTHRC1	Q96CG8	243 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	RIPOR3	Q96MK2	946 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	SNX18	Q96RF0	628 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	TWNK	Q96RR1	684 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	CRAMP1	Q96RY5	1269 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	PRR25	Q96S07	402 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	ELAC2	Q9BQ52	826 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	WAC	Q9BTA9	647 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	TBCD	Q9BTW9	1192 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	TUBB6	Q9BUF5	446 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	MLPH	Q9BV36	600 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	MXD3	Q9BW11	206 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	TWSG1	Q9GZX9	223 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	DPH5	Q9H2P9	285 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	SH2D4A	Q9H788	454 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	TLE6	Q9H808	572 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	CRLF2	Q9HC73	371 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	CHST12	Q9NRB3	414 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	TXLNG	Q9NUQ3	528 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	INTS9	Q9NV88	658 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	ASB6	Q9NWX5	421 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	GAR1	Q9NY12	217 aa	Known RBP	5.62	□□□□□ -1.51
CD44-231	ENST00000531110	SELENON	Q9NZV5	590 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	NYAP2	Q9P242	653 aa		5.62	□□□□□ -1.51
CD44-231	ENST00000531110	NKX1-2	Q9UD57	310 aa	Predicted RBP	5.62	□□□□□ -1.51

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