RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 A0A1W2PQY0 241 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 KANSL1LA0AUZ9 987 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 GOLGA8CPA6NN73 597 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 NT5C1B-RDH14C9J2C7 533 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 H3BNH8 94 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 E2F3O00716 465 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 SOCS2O14508 198 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 OR1I1O60431 355 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 KLKB1P03952 638 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 PRDX3P30048 256 aaKnown RBP21.03■□□□□ 0.96
VPS28-205ENST00000526204 AASDHQ4L235 1098 aaPredicted RBP21.03■□□□□ 0.96
VPS28-205ENST00000526204 RNF219Q5W0B1 726 aaPredicted RBP21.03■□□□□ 0.96
VPS28-205ENST00000526204 SLC8B1Q6J4K2 584 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 FAM43BQ6ZT52 329 aaPredicted RBP21.03■□□□□ 0.96
VPS28-205ENST00000526204 TAS1R1Q7RTX1 841 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 PTRH1Q86Y79 214 aaKnown RBP21.03■□□□□ 0.96
VPS28-205ENST00000526204 EFHBQ8N7U6 833 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 TFAP2CQ92754 450 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 C9orf16Q9BUW7 83 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 ALG2Q9H553 416 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 DUS2Q9NX74 493 aaKnown RBP21.03■□□□□ 0.96
VPS28-205ENST00000526204 MYOCOSA0A1B0GUC4 107 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 DYTNA2CJ06 578 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 ZNF23P17027 643 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 POLR2JP52435 117 aaKnown RBP21.02■□□□□ 0.96
VPS28-205ENST00000526204 ZNF783Q6ZMS7 281 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 NPAS4Q8IUM7 802 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 TTC30BQ8N4P2 665 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 TMEM199Q8N511 208 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 TRIML2Q8N7C3 387 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 TRPV3Q8NET8 790 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 HM13Q8TCT9 377 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 RMND5BQ96G75 393 aaPredicted RBP21.02■□□□□ 0.96
VPS28-205ENST00000526204 CENPNQ96H22 339 aaPredicted RBP21.02■□□□□ 0.96
VPS28-205ENST00000526204 MPP4Q96JB8 637 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 OLAHQ9NV23 265 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 NBNO60934 754 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 C7P10643 843 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 SGSHP51688 502 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 HK3P52790 923 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 EEFSECP57772 596 aaKnown RBP21.02■□□□□ 0.96
VPS28-205ENST00000526204 CAP1Q01518 475 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 ADGRG5Q8IZF4 528 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 VPS33AQ96AX1 596 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 PDLIM5Q96HC4 596 aaKnown RBP21.02■□□□□ 0.96
VPS28-205ENST00000526204 SMIM14Q96QK8 99 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 KCTD14Q9BQ13 255 aaPredicted RBP21.02■□□□□ 0.96
VPS28-205ENST00000526204 NUDT4Q9NZJ9 180 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 HCSTQ9UBK5 93 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 PKP3Q9Y446 797 aa21.02■□□□□ 0.96
VPS28-205ENST00000526204 TNPO3Q9Y5L0 923 aaKnown RBP21.02■□□□□ 0.96
VPS28-205ENST00000526204 FAM234BA2RU67 622 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 GRXCR2A6NFK2 248 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 BAIAP3O94812 1187 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 TMCC1O94876 653 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 UMPSP11172 480 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 ZFP36L2P47974 494 aaKnown RBP21.01■□□□□ 0.95
VPS28-205ENST00000526204 GSK3BP49841 420 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 TUBA4AP68366 448 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 TRAF2Q12933 501 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 TGFBIQ15582 683 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 NCEH1Q6PIU2 408 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 TAS2R42Q7RTR8 314 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 CBR4Q8N4T8 237 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 DNAJB14Q8TBM8 379 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 DTNBP1Q96EV8 351 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 TEX37Q96LM6 180 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 CAAP1Q9H8G2 361 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 CLK4Q9HAZ1 481 aaKnown RBP21.01■□□□□ 0.95
VPS28-205ENST00000526204 TRPM5Q9NZQ8 1165 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 EIF2B4Q9UI10 523 aaKnown RBP21.01■□□□□ 0.95
VPS28-205ENST00000526204 SLC8A2Q9UPR5 921 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 ASPDHA6ND91 283 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 UFM1P61960 85 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 ARF5P84085 180 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 CACNG1Q06432 222 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 ATP6AP1LQ52LC2 224 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 C6orf136Q5SQH8 315 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 CXorf57Q6NSI4 855 aaKnown RBP21.01■□□□□ 0.95
VPS28-205ENST00000526204 TMEM173Q86WV6 379 aaPredicted RBP21.01■□□□□ 0.95
VPS28-205ENST00000526204 CPNE9Q8IYJ1 553 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 CHCHD4Q8N4Q1 142 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 BPIFA1Q9NP55 256 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 MTRRQ9UBK8 725 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 PCDHB1Q9Y5F3 818 aa21.01■□□□□ 0.95
VPS28-205ENST00000526204 SAC3D1A6NKF1 404 aa21■□□□□ 0.95
VPS28-205ENST00000526204 ARVCFO00192 962 aa21■□□□□ 0.95
VPS28-205ENST00000526204 C1RP00736 705 aa21■□□□□ 0.95
VPS28-205ENST00000526204 SP3Q02447 781 aa21■□□□□ 0.95
VPS28-205ENST00000526204 LIPEQ05469 1076 aa21■□□□□ 0.95
VPS28-205ENST00000526204 CYP51A1Q16850 503 aa21■□□□□ 0.95
VPS28-205ENST00000526204 TMEM259Q4ZIN3 620 aa21■□□□□ 0.95
VPS28-205ENST00000526204 INO80DQ53TQ3 878 aaPredicted RBP21■□□□□ 0.95
VPS28-205ENST00000526204 CERS6Q6ZMG9 384 aa21■□□□□ 0.95
VPS28-205ENST00000526204 PRR23BQ6ZRT6 265 aa21■□□□□ 0.95
VPS28-205ENST00000526204 FNDC5Q8NAU1 212 aa21■□□□□ 0.95
VPS28-205ENST00000526204 OR2T11Q8NH01 316 aa21■□□□□ 0.95
VPS28-205ENST00000526204 SEPT8Q92599 483 aa21■□□□□ 0.95
VPS28-205ENST00000526204 ACOX2Q99424 681 aa21■□□□□ 0.95
VPS28-205ENST00000526204 P2RY12Q9H244 342 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms