RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 FBRSL1Q9HCM7 1045 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 PNRC2Q9NPJ4 139 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 ASAH2Q9NR71 780 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 ZBTB40Q9NUA8 1239 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 ZNHIT6Q9NWK9 470 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 ZNHIT2Q9UHR6 403 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 MKLN1Q9UL63 735 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 EXOC7Q9UPT5 735 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 TRAF3IP3Q9Y228 551 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 KLHL20Q9Y2M5 609 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 CAB39Q9Y376 341 aaPredicted RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 SLC4A4Q9Y6R1 1079 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 CDK12Q9NYV4 1490 aaPredicted RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 MON2Q7Z3U7 1717 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 ATRNO75882 1429 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 PIK3C2AO00443 1686 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 A0A1W2PP64 1363 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 CPDO75976 1380 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 KTN1Q86UP2 1357 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 PHRF1Q9P1Y6 1649 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 UTYO14607 1347 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 SLIT3O75094 1523 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 A0A096LPK6 155 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 A0A1W2PQ09 198 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 FRMD3A2A2Y4 597 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 MANSC4A6NHS7 340 aaPredicted RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 LACTBL1A8MY62 500 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 MYO1GB0I1T2 1018 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 EIF3CLB5ME19 914 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 SGK1O00141 431 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 WDR46O15213 610 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 TP73O15350 636 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 ENTPD3O75355 529 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 E2F6O75461 281 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 BCAR3O75815 825 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 TRIM16O95361 564 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 OR2C1O95371 312 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 GCNT3O95395 438 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 GGPS1O95749 300 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 RARGP13631 454 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 FERP16591 822 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 CTPS1P17812 591 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 KELP23276 732 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 GCH1P30793 250 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 CDAP32320 146 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 ATP5OP48047 213 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 GNAQP50148 359 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 CLDN2P57739 230 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 GHRHRQ02643 423 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 GOLGA8DPQ0D2H9 430 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 NIPAL4Q0D2K0 466 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 OLIG2Q13516 323 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 CRYMQ14894 314 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 VEPH1Q14D04 833 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 SHBQ15464 509 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 TRADDQ15628 312 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 TYSND1Q2T9J0 566 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 CEP78Q5JTW2 689 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 ENTPD8Q5MY95 495 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 PIK3CD-AS1Q5SR53 167 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 ADALQ6DHV7 355 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 MIS18BP1Q6P0N0 1132 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 KLHL35Q6PF15 583 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 ANGPTL8Q6UXH0 198 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 GSTA5Q7RTV2 222 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 RABEPKQ7Z6M1 372 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 SERPINA11Q86U17 422 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 TBC1D26Q86UD7 250 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 UNC5CLQ8IV45 518 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 TUSC5Q8IXB3 177 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 MAML2Q8IZL2 1156 aaPredicted RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 CCDC148Q8NFR7 591 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 CMASQ8NFW8 434 aaPredicted RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 DPF1Q92782 380 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 GTF3C6Q969F1 213 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 RMDN1Q96DB5 314 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 SIGLEC11Q96RL6 698 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 TXN2Q99757 166 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 ZPBPQ9BS86 351 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 SCNM1Q9BWG6 230 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 APOL6Q9BWW8 343 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 TEX12Q9BXU0 123 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 R3HDMLQ9H3Y0 253 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 DNAJC18Q9H819 358 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 WDR6Q9NNW5 1121 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 PDGFCQ9NRA1 345 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 SIRT3Q9NTG7 399 aaPredicted RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 SPATS2LQ9NUQ6 558 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 TMEM45AQ9NWC5 275 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 NINJ2Q9NZG7 142 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 FLRT1Q9NZU1 646 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 MRPL15Q9P015 296 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 ABI3Q9P2A4 366 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 MARCH4Q9P2E8 410 aaPredicted RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 PTBP2Q9UKA9 531 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 LIPT1Q9Y234 373 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 PIN4Q9Y237 131 aaKnown RBP4.79□□□□□ -1.64
CD44-220ENST00000525688 CARD8Q9Y2G2 431 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 TMED5Q9Y3A6 229 aa4.79□□□□□ -1.64
CD44-220ENST00000525688 COX11Q9Y6N1 276 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms