RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZFYVE19Q96K21 471 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 WDR83Q9BRX9 315 aaKnown RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 CCM2Q9BSQ5 444 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 WRAP53Q9BUR4 548 aaKnown RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 EIF3LQ9Y262 564 aaKnown RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 LTBP2Q14767 1821 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3DA0A087WVF3 549 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3IA0A087WXS9 549 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3EA0A087X179 549 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3KA0A087X1G2 549 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3FA6NER0 549 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3LB9A6J9 549 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 FZD6O60353 706 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 NDUFS2O75306 463 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3HP0C7X1 549 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 DHRS4L1P0CG22 281 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 ADRB3P13945 408 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 EPB42P16452 691 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 BPIP17213 487 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 IMPDH1P20839 514 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 KCNA5P22460 613 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 PBLDP30039 288 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 OXTRP30559 389 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 ADSLP30566 484 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 ARSDP51689 593 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 ALDH18A1P54886 795 aaKnown RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 HSPA14Q0VDF9 509 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 KCNC3Q14003 757 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 POM121L1PQ3SYA9 428 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 PAGE2BQ5JRK9 111 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 GPRC6AQ5T6X5 926 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3GQ6DHY5 549 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3CQ6IPX1 549 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 METTL2BQ6P1Q9 378 aaKnown RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 PIGWQ7Z7B1 504 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 LDB1Q86U70 411 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 ADIPOR2Q86V24 386 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TBC1D3Q8IZP1 549 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 CHST14Q8NCH0 376 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 CFAP61Q8NHU2 1237 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 HLA-CQ95604 372 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 MCCC1Q96RQ3 725 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 TRIM15Q9C019 465 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 MID1IP1Q9NPA3 183 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 POLG2Q9UHN1 485 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TSPAN11A1L157 253 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 NPEPPSL1A6NEC2 478 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 SLC22A2O15244 555 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 ENO1P06733 434 aaKnown RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 CREB1P16220 341 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 ZNF37AP17032 561 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 MAGEA12P43365 314 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 CAMK2GQ13555 558 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 UBE2R2Q712K3 238 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 CYP2U1Q7Z449 544 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 PCYOX1LQ8NBM8 494 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 GLYATL1Q969I3 302 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 SPACA7Q96KW9 195 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 ZNF317Q96PQ6 595 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 FAM83CQ9BQN1 747 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 PHF7Q9BWX1 381 aaPredicted RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 SLC17A6Q9P2U8 582 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 TSR3Q9UJK0 312 aaKnown RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 FBXO10Q9UK96 956 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 NUMBLQ9Y6R0 609 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 PATJQ8NI35 1801 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 RFXAPO00287 272 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 FPGTO14772 594 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 MAP3K7O43318 606 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 KLF8O95600 359 aaPredicted RBP8.27□□□□□ -1.08
USP54-215ENST00000497106 LINC00271P0C7V0 271 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 CXCR2P25025 360 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 RBM20Q5T481 1227 aaKnown RBP8.27□□□□□ -1.08
USP54-215ENST00000497106 CACHD1Q5VU97 1274 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 ZNF852Q6ZMS4 543 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 MILR1Q7Z6M3 343 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 STARD8Q92502 1023 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 MYADMQ96S97 322 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 GORASP1Q9BQQ3 440 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 RAB11FIP5Q9BXF6 653 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 NFKBIL1Q9UBC1 381 aaPredicted RBP8.27□□□□□ -1.08
USP54-215ENST00000497106 TAGLN3Q9UI15 199 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 INTS6Q9UL03 887 aaKnown RBP8.27□□□□□ -1.08
USP54-215ENST00000497106 HEBP2Q9Y5Z4 205 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 ACTL7AQ9Y615 435 aa8.27□□□□□ -1.08
USP54-215ENST00000497106 PRR23AA6NEV1 266 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 H3BM21 787 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 GREM1O60565 184 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 CCNT2O60583 730 aaKnown RBP8.27□□□□□ -1.09
USP54-215ENST00000497106 HLA-EP13747 358 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 TIMP2P16035 220 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 EEF1DP29692 281 aaKnown RBP8.27□□□□□ -1.09
USP54-215ENST00000497106 LIG3P49916 1009 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 HERVK_113P63132 956 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 LCP2Q13094 533 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 NEK5Q6P3R8 708 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 ZCCHC23Q6ZST2 131 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 GPRIN3Q6ZVF9 776 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 NEK10Q6ZWH5 1172 aa8.27□□□□□ -1.09
USP54-215ENST00000497106 SIDT2Q8NBJ9 832 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms