RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 KMOO15229 486 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 CDK14O94921 469 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 TYRP1P17643 537 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 NR2C2P49116 596 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 CLCNKAP51800 687 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 GFERP55789 205 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 NFKB2Q00653 900 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 ATP13A5Q4VNC0 1218 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 SIRPB2Q5JXA9 342 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 BZW1Q7L1Q6 419 aaKnown RBP21.24■□□□□ 0.99
USP40-215ENST00000484528 PRICKLE2Q7Z3G6 844 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 CCDC50Q8IVM0 306 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 ZNF547Q8IVP9 402 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 TRIM48Q8IWZ4 208 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 GDAP1Q8TB36 358 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 RTP4Q96DX8 246 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 TRIM10Q9UDY6 481 aa21.24■□□□□ 0.99
USP40-215ENST00000484528 hCG_1818297A0A087WSY0 165 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 LILRA5A6NI73 299 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 GPR89AB7ZAQ6 455 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 GPR39O43194 453 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 BUD23O43709 281 aaKnown RBP21.23■□□□□ 0.99
USP40-215ENST00000484528 VIPP01282 170 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 GPR89BP0CG08 455 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 RPL10P27635 214 aaKnown RBP21.23■□□□□ 0.99
USP40-215ENST00000484528 DRG2P55039 364 aaKnown RBP21.23■□□□□ 0.99
USP40-215ENST00000484528 MC2RQ01718 297 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 TRAPPC5Q8IUR0 188 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 ZNF567Q8N184 647 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 TTC30BQ8N4P2 665 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 TC2NQ8N9U0 490 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 IPMKQ8NFU5 416 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 P3H4Q92791 437 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 OXNAD1Q96HP4 312 aaPredicted RBP21.23■□□□□ 0.99
USP40-215ENST00000484528 TIMM29Q9BSF4 260 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 SLC12A9Q9BXP2 914 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 OGFRQ9NZT2 677 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 ZNF624Q9P2J8 865 aaPredicted RBP21.23■□□□□ 0.99
USP40-215ENST00000484528 SLC30A1Q9Y6M5 507 aa21.23■□□□□ 0.99
USP40-215ENST00000484528 OR52A4PA6NMU1 304 aa21.22■□□□□ 0.99
USP40-215ENST00000484528 VEGFDO43915 354 aa21.22■□□□□ 0.99
USP40-215ENST00000484528 SLC19A1P41440 591 aa21.22■□□□□ 0.99
USP40-215ENST00000484528 TFDP3Q5H9I0 405 aa21.22■□□□□ 0.99
USP40-215ENST00000484528 TMEM26Q6ZUK4 368 aa21.22■□□□□ 0.99
USP40-215ENST00000484528 AVL9Q8NBF6 648 aa21.22■□□□□ 0.99
USP40-215ENST00000484528 MRGPRX2Q96LB1 330 aa21.22■□□□□ 0.99
USP40-215ENST00000484528 TEFMQ96QE5 360 aaKnown RBP21.22■□□□□ 0.99
USP40-215ENST00000484528 VPS35Q96QK1 796 aa21.22■□□□□ 0.99
USP40-215ENST00000484528 PILRAQ9UKJ1 303 aa21.22■□□□□ 0.99
USP40-215ENST00000484528 MN1Q10571 1320 aaPredicted RBP21.22■□□□□ 0.99
USP40-215ENST00000484528 LOC285095A0A1B0GVY8 99 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 BRAFP15056 766 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 XRCC1P18887 633 aaPredicted RBP21.21■□□□□ 0.99
USP40-215ENST00000484528 HMGCLP35914 325 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 TNNT3P45378 269 aaPredicted RBP21.21■□□□□ 0.99
USP40-215ENST00000484528 HADHBP55084 474 aaKnown RBP21.21■□□□□ 0.99
USP40-215ENST00000484528 CLCA4Q14CN2 919 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 FAM151BQ6UXP7 276 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 CEACAM20Q6UY09 585 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 PID1Q7Z2X4 250 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 PLXDC1Q8IUK5 500 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 KATNAL2Q8IYT4 538 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 UNC5BQ8IZJ1 945 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 BLOC1S5Q8TDH9 187 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 KRT35Q92764 455 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 TGM7Q96PF1 710 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 QKIQ96PU8 341 aaKnown RBP eCLIP21.21■□□□□ 0.99
USP40-215ENST00000484528 SRPK1Q96SB4 655 aaKnown RBP21.21■□□□□ 0.99
USP40-215ENST00000484528 HEMGNQ9BXL5 484 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 TRIM5Q9C035 493 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 FAM117AQ9C073 453 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 EPB41L1Q9H4G0 881 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 C10orf88Q9H8K7 445 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 IL26Q9NPH9 171 aa21.21■□□□□ 0.99
USP40-215ENST00000484528 HEMK1Q9Y5R4 338 aaPredicted RBP21.21■□□□□ 0.99
USP40-215ENST00000484528 PRR19A6NJB7 356 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 UGT1A9O60656 530 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 UBXN7O94888 489 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 ZRANB2O95218 330 aaKnown RBP eCLIP21.2■□□□□ 0.98
USP40-215ENST00000484528 UGT1A6P19224 532 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 UGT1A1P22309 533 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 UGT1A4P22310 534 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 CA5AP35218 305 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 TMEM115Q12893 351 aaPredicted RBP21.2■□□□□ 0.98
USP40-215ENST00000484528 GTF2H3Q13889 308 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 CHRNA6Q15825 494 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 TIPARPQ7Z3E1 657 aaKnown RBP21.2■□□□□ 0.98
USP40-215ENST00000484528 GLT6D1Q7Z4J2 308 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 C11orf96Q7Z7L8 435 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 RSC1A1Q92681 617 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 TRIM4Q9C037 500 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 UGT1A7Q9HAW7 530 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 UGT1A10Q9HAW8 530 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 UGT1A8Q9HAW9 530 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 FBXO8Q9NRD0 319 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 PCDHA13Q9Y5I0 950 aa21.2■□□□□ 0.98
USP40-215ENST00000484528 POLR1CO15160 346 aaPredicted RBP21.19■□□□□ 0.98
USP40-215ENST00000484528 MTSS1O43312 755 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 STK17BO94768 372 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 AMD1P17707 334 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms