RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CHST15Q7LFX5 561 aaPredicted RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 ZDHHC17Q8IUH5 632 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 TAB3Q8N5C8 712 aaPredicted RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 C3orf20Q8ND61 904 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 OR2Y1Q8NGV0 311 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 ADAMTS18Q8TE60 1221 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 SHC3Q92529 594 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 SPOCK2Q92563 424 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 RSC1A1Q92681 617 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 ZNF501Q96CX3 271 aaPredicted RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 ECHDC3Q96DC8 303 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 INTS4Q96HW7 963 aaKnown RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 CLEC4MQ9H2X3 399 aaPredicted RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 ACTR5Q9H9F9 607 aaPredicted RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 EXOC1Q9NV70 894 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 PCMTD2Q9NV79 361 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 TMEM248Q9NWD8 314 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 ADAM21Q9UKJ8 722 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 COQ4Q9Y3A0 265 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 INTS1Q8N201 2190 aaKnown RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 IGHV5-51A0A0C4DH38 117 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 UBA6A0AVT1 1052 aaPredicted RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 TRIM49BA6NDI0 452 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 CRLF1O75462 422 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 CTAG2O75638 210 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 KLF7O75840 302 aaPredicted RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 TSPAN12O95859 305 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 MSL3P1P0C860 447 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 UNGP13051 313 aaPredicted RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 BRAFP15056 766 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 VIPR1P32241 457 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 MCCD1P59942 119 aaPredicted RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 NRG1Q02297 640 aaPredicted RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 CEBPZQ03701 1054 aaKnown RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 CACNG1Q06432 222 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 KEAP1Q14145 624 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 SYCP1Q15431 976 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 CDSNQ15517 529 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 E2F4Q16254 413 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 DNTTIP2Q5QJE6 756 aaKnown RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 ERICH6BQ5W0A0 696 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 C11orf57Q6ZUT1 292 aaPredicted RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 MARK2Q7KZI7 788 aaKnown RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 PELI3Q8N2H9 469 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 AOPEPQ8N6M6 819 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 ZNF397Q8NF99 534 aaPredicted RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 EXD1Q8NHP7 514 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 PTERQ96BW5 349 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 SPATA32Q96LK8 384 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 CLIC6Q96NY7 704 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 NT5C1BQ96P26 610 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 PLEKHG4BQ96PX9 1271 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 TAAR6Q96RI8 345 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 SARGQ9BW04 601 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 PANK2Q9BZ23 570 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 SOHLH2Q9NX45 425 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 B4GALT6Q9UBX8 382 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 KCNK6Q9Y257 313 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 ZNF835Q9Y2P0 537 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 PTRH2Q9Y3E5 179 aaKnown RBP7.86□□□□□ -1.15
USP54-211ENST00000474929 ANK2Q01484 3957 aa7.86□□□□□ -1.15
USP54-211ENST00000474929 VPS13CQ709C8 3753 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 CCDC66A2RUB6 948 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 GPR89AB7ZAQ6 455 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 SOCS6O14544 535 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 DNAJC6O75061 913 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 SLCO2B1O94956 709 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 HEXIM1O94992 359 aaKnown RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 ASMTLO95671 621 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 GPR89BP0CG08 455 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 EPB41P11171 864 aaKnown RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 ACP5P13686 325 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 FDXRP22570 491 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 CHRNB4P30926 498 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 SULT1E1P49888 294 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 TNFSF10P50591 281 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 YBEYP58557 167 aaPredicted RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 CNGA3Q16281 694 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 PARP15Q460N3 678 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 TRIM72Q6ZMU5 477 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 C16orf47Q6ZP98 133 aaPredicted RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 B4GALNT4Q76KP1 1039 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 NLRP8Q86W28 1048 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 CAMK1DQ8IU85 385 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 SPPL2CQ8IUH8 684 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 CPSF7Q8N684 471 aaKnown RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 SLC38A9Q8NBW4 561 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 C1orf131Q8NDD1 294 aaKnown RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 PROKR1Q8TCW9 393 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 PTCD2Q8WV60 388 aaKnown RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 DHX58Q96C10 678 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 CXorf40BQ96DE9 158 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 EXOC2Q96KP1 924 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 NPY6RQ99463 290 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 MAP3K3Q99759 626 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 BDH2Q9BUT1 245 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 RNF32Q9H0A6 362 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 CATSPERBQ9H7T0 1116 aa7.85□□□□□ -1.15
USP54-211ENST00000474929 MRM3Q9HC36 420 aaKnown RBP7.85□□□□□ -1.15
USP54-211ENST00000474929 KCNJ16Q9NPI9 418 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms