RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 YPEL5P62699 121 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 GUCY2DQ02846 1103 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 DHX9Q08211 1270 aaKnown RBP6.92□□□□□ -1.3
LIMD1-204ENST00000474665 NFATC2Q13469 925 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 CAMK2BQ13554 666 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 NFATC4Q14934 902 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 ANKRD20A4Q4UJ75 823 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 C4orf17Q53FE4 359 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 PCID2Q5JVF3 399 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 HP1BP3Q5SSJ5 553 aaPredicted RBP6.92□□□□□ -1.3
LIMD1-204ENST00000474665 UBAP2Q5T6F2 1119 aaKnown RBP6.92□□□□□ -1.3
LIMD1-204ENST00000474665 RAET1GQ6H3X3 334 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 C8orf74Q6P047 294 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 XKR5Q6UX68 686 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 MACC1Q6ZN28 852 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 TMEM135Q86UB9 458 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 ZNF547Q8IVP9 402 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 UNC5BQ8IZJ1 945 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 RBFAQ8N0V3 343 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 SLC25A45Q8N413 288 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 TRAM1L1Q8N609 369 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 CEP112Q8N8E3 955 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 FBXO25Q8TCJ0 367 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 ZNF398Q8TD17 642 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 STYXQ8WUJ0 223 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 BTN2A2Q8WVV5 523 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 GLYATL1Q969I3 302 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 TSACCQ96A04 125 aaPredicted RBP6.92□□□□□ -1.3
LIMD1-204ENST00000474665 PDXPQ96GD0 296 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 HIC2Q96JB3 615 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 ZSCAN5AQ9BUG6 496 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 SPATA16Q9BXB7 569 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 C1QTNF7Q9BXJ2 289 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 CDH19Q9H159 772 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 FAM96AQ9H5X1 160 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 WDR26Q9H7D7 661 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 ERVMER34-1Q9H9K5 563 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 MRM3Q9HC36 420 aaKnown RBP6.92□□□□□ -1.3
LIMD1-204ENST00000474665 SMOXQ9NWM0 555 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 UCKL1Q9NWZ5 548 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 KCTD5Q9NXV2 234 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 IL1RAPL1Q9NZN1 696 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 ANAPC5Q9UJX4 755 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 SLC17A4Q9Y2C5 497 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 PKP3Q9Y446 797 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 TEX264Q9Y6I9 313 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 UBR5O95071 2799 aaPredicted RBP6.92□□□□□ -1.3
LIMD1-204ENST00000474665 KIF26BQ2KJY2 2108 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 SEC16AO15027 2179 aa6.92□□□□□ -1.3
LIMD1-204ENST00000474665 SNRNP200O75643 2136 aaKnown RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 DOPEY2Q9Y3R5 2298 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 IGLV3-16A0A075B6K0 115 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 A0A1B0GTQ1 180 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 FAM237BA0A1B0GVD1 139 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PRR19A6NJB7 356 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 GOLGA8KD6RF30 607 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 GOLGA8TH3BQL2 631 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 TOR1BO14657 336 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 TLX3O43711 291 aaPredicted RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 GOT2P00505 430 aaKnown RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 C1QAP02745 245 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 CSF2P04141 144 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 ZNF8P17098 575 aaPredicted RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 MC4RP32245 332 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 ELK3P41970 407 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 RXRGP48443 463 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 CARSP49589 748 aaKnown RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 CTSCP53634 463 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PLTPP55058 493 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 SRP54P61011 504 aaKnown RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 IL9RQ01113 521 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 BNIP3Q12983 259 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 TEAD4Q15561 434 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 SMAD1Q15797 465 aaKnown RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 DBN1Q16643 649 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 SKIDA1Q1XH10 827 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 BBS9Q3SYG4 887 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 GLE1Q53GS7 698 aaKnown RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 GPRC6AQ5T6X5 926 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 STEAP4Q687X5 459 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PDPK2PQ6A1A2 396 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 DBX2Q6ZNG2 339 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 LRRC69Q6ZNQ3 347 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PRICKLE2Q7Z3G6 844 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 RABEPKQ7Z6M1 372 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 C11orf96Q7Z7L8 435 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PCGF5Q86SE9 256 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 ADGRG6Q86SQ4 1221 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 LDB1Q86U70 411 aaPredicted RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PARGQ86W56 976 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 SPNS2Q8IVW8 549 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 SFTPA2Q8IWL1 248 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 NXPE1Q8N323 547 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 MINDY1Q8N5J2 469 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 RASGEF1AQ8N9B8 481 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 DDHD1Q8NEL9 900 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 CCL4L1Q8NHW4 92 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 FAM174AQ8TBP5 190 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 SAP25Q8TEE9 199 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PEX13Q92968 403 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms