RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 VASH2Q86V25 355 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 LRRTM4Q86VH4 590 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 TMEM139Q8IV31 216 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 LRRC57Q8N9N7 239 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 AGBL5Q8NDL9 886 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 IPMKQ8NFU5 416 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 OR10G6Q8NH81 332 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 ACTL9Q8TC94 416 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 ALG3Q92685 438 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 TAAR9Q96RI9 348 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 TIMM29Q9BSF4 260 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 TBC1D10AQ9BXI6 508 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 TRHDEQ9UKU6 1024 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 EFR3BQ9Y2G0 817 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.3■□□□□ 0.52
COL7A1-209ENST00000474432 B3GALT1Q9Y5Z6 326 aa18.3■□□□□ 0.52
COL7A1-209ENST00000474432 OR5K4A6NMS3 321 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 KMOO15229 486 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 PJA2O43164 708 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 BUD23O43709 281 aaKnown RBP18.29■□□□□ 0.52
COL7A1-209ENST00000474432 DUX1O43812 170 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 UGT1A9O60656 530 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 CDK14O94921 469 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 AGTP01019 485 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 XRCC1P18887 633 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-209ENST00000474432 UGT1A6P19224 532 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 UGT1A1P22309 533 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 UGT1A4P22310 534 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 CTNNA2P26232 953 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 CD82P27701 267 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 UGT1A3P35503 534 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 EPHA4P54764 986 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 OTUD4Q01804 1114 aaKnown RBP18.29■□□□□ 0.52
COL7A1-209ENST00000474432 TMEM115Q12893 351 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-209ENST00000474432 MSLNQ13421 630 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-209ENST00000474432 LY6DQ14210 128 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 PTPRCAPQ14761 206 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 CHRNA6Q15825 494 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 ABRAXAS1Q6UWZ7 409 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 ACRBPQ8NEB7 543 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 ART4Q93070 314 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 SH3KBP1Q96B97 665 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 OSBPL8Q9BZF1 889 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 SPRY4Q9C004 299 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 UGT1A7Q9HAW7 530 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 UGT1A10Q9HAW8 530 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 UGT1A8Q9HAW9 530 aa18.29■□□□□ 0.52
COL7A1-209ENST00000474432 AKAP7Q9P0M2 348 aaPredicted RBP18.29■□□□□ 0.52
COL7A1-209ENST00000474432 A0A0U1RQJ8 604 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 GRID2IPA4D2P6 1211 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 LILRA5A6NI73 299 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 B4E171 279 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 SLC2A4P14672 509 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 HLA-DPA1P20036 260 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 ADRA1AP35348 466 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 TSPAN7P41732 249 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 C19orf57Q0VDD7 668 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 OLIG2Q13516 323 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 TAF1BQ53T94 588 aaPredicted RBP18.28■□□□□ 0.52
COL7A1-209ENST00000474432 RANBP10Q6VN20 620 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 BLOC1S5Q8TDH9 187 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 NCSTNQ92542 709 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 NKD1Q969G9 470 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 AHCYL2Q96HN2 611 aaKnown RBP18.28■□□□□ 0.52
COL7A1-209ENST00000474432 FAM118BQ9BPY3 351 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 DDA1Q9BW61 102 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 GBA3Q9H227 469 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 OSGEPL1Q9H4B0 414 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 UCK1Q9HA47 277 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 LUC7LQ9NQ29 371 aaKnown RBP18.28■□□□□ 0.52
COL7A1-209ENST00000474432 HACD3Q9P035 362 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 RSPH14Q9UHP6 348 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 DNAJC16Q9Y2G8 782 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 SLC30A1Q9Y6M5 507 aa18.28■□□□□ 0.52
COL7A1-209ENST00000474432 A8MU76 341 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 H7C0C1 242 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 PYGMP11217 842 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 CSTF2P33240 577 aaKnown RBP eCLIP18.27■□□□□ 0.52
COL7A1-209ENST00000474432 SPAM1P38567 509 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 ATP5OP48047 213 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 CTSCP53634 463 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 INSCQ1MX18 579 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 LINC00303Q3SY05 128 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 SNAP47Q5SQN1 464 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 TMEM164Q5U3C3 297 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 FAM151BQ6UXP7 276 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 WASH2PQ6VEQ5 465 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 RASGEF1AQ8N9B8 481 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 JPH3Q8WXH2 748 aaPredicted RBP18.27■□□□□ 0.52
COL7A1-209ENST00000474432 CALR3Q96L12 384 aaKnown RBP18.27■□□□□ 0.52
COL7A1-209ENST00000474432 WASH6PQ9NQA3 447 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 SLC39A1Q9NY26 324 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 WDR37Q9Y2I8 494 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 PCDHGA4Q9Y5G9 962 aa18.27■□□□□ 0.52
COL7A1-209ENST00000474432 MN1Q10571 1320 aaPredicted RBP18.26■□□□□ 0.51
COL7A1-209ENST00000474432 CCDC66A2RUB6 948 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 EFCAB7A8K855 629 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 C9P02748 559 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 VAV2P52735 878 aa18.26■□□□□ 0.51
COL7A1-209ENST00000474432 MC2RQ01718 297 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms