RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SIRPB2Q5JXA9 342 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 DCAF12Q5T6F0 453 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 C11orf63Q6NUN7 778 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 C11orf96Q7Z7L8 435 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 LRRTM4Q86VH4 590 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 ZNF567Q8N184 647 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 HAUS1Q96CS2 278 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 MRGPRX2Q96LB1 330 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 SRPK1Q96SB4 655 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 TIMM29Q9BSF4 260 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 ANP32EQ9BTT0 268 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 EPB41L1Q9H4G0 881 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 UCK1Q9HA47 277 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 BPIFA1Q9NP55 256 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 OGFRQ9NZT2 677 aa18.52■□□□□ 0.56
CCDC88B-206ENST00000473405 F5H423 210 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 MTSS1O43312 755 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 VEGFDO43915 354 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 BRAFP15056 766 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 XRCC1P18887 633 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 ATP1A2P50993 1020 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 MC2RQ01718 297 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 CCDC70Q6NSX1 233 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 ZSCAN1Q8NBB4 408 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 AVL9Q8NBF6 648 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 KRT35Q92764 455 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 P3H4Q92791 437 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 RTP4Q96DX8 246 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 FCRL5Q96RD9 977 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 CTRCQ99895 268 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 SPRY4Q9C004 299 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 IL26Q9NPH9 171 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 KLHL8Q9P2G9 620 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 ZNF624Q9P2J8 865 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 PILRAQ9UKJ1 303 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 DNAJC16Q9Y2G8 782 aa18.51■□□□□ 0.55
CCDC88B-206ENST00000473405 GPR39O43194 453 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 ZRANB2O95218 330 aaKnown RBP eCLIP18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 EPOP01588 193 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 FAM87AP0C7U9 286 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 LIFP15018 202 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 SLC19A1P41440 591 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 GFERP55789 205 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 SLC1A5Q15758 541 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 SEPT7Q16181 437 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 TBR1Q16650 682 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 CACNA2D3Q8IZS8 1091 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 TEFMQ96QE5 360 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 GORASP1Q9BQQ3 440 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 SLC12A9Q9BXP2 914 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 TRABDQ9H4I3 376 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 APMAPQ9HDC9 416 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 SIDT1Q9NXL6 827 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 KLHL3Q9UH77 587 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 PCDHA13Q9Y5I0 950 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 SLC30A1Q9Y6M5 507 aa18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 PRRC2CQ9Y520 2896 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-206ENST00000473405 J3QKU1 62 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 GAPDHSO14556 408 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 RAD1O60671 282 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 CDK14O94921 469 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 C9P02748 559 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 ANKRD34CP0C6C1 535 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 CA5AP35218 305 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 PPP2R5EQ16537 467 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 TMEM26Q6ZUK4 368 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 BBS12Q6ZW61 710 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 CCDC50Q8IVM0 306 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 RCOR2Q8IZ40 523 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 SLC25A41Q8N5S1 370 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 IL22RA1Q8N6P7 574 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 DTX3LQ8TDB6 740 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 VAT1Q99536 393 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 FBXO8Q9NRD0 319 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 IL17CQ9P0M4 197 aa18.49■□□□□ 0.55
CCDC88B-206ENST00000473405 OR52A4PA6NMU1 304 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 PDZK1P1A8MUH7 402 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 HACD1B0YJ81 288 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 RPL10P27635 214 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 DRG2P55039 364 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 TMEM115Q12893 351 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 AGAP9Q5VTM2 703 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 ABRAXAS1Q6UWZ7 409 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 XKR5Q6UX68 686 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 PLXDC1Q8IUK5 500 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 TRAPPC5Q8IUR0 188 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 CCDC170Q8IYT3 715 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 IPMKQ8NFU5 416 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 RBM41Q96IZ5 413 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 HEMGNQ9BXL5 484 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 TRIM5Q9C035 493 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 C10orf88Q9H8K7 445 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 SLC40A1Q9NP59 571 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 STARD5Q9NSY2 213 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 RELNP78509 3460 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 MAST4O15021 2626 aa18.48■□□□□ 0.55
CCDC88B-206ENST00000473405 RCCD1A6NED2 376 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 APOC4-APOC2K7ER74 178 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 UBXN7O94888 489 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms