RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MAD1L1Q9Y6D9 718 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 RPS6KL1Q9Y6S9 549 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 CABIN1Q9Y6J0 2220 aa11.8□□□□□ -0.52
VPS13D-204ENST00000469054 IGLV3-16A0A075B6K0 115 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 CFAP99D6REC4 459 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 KMOO15229 486 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 SIGLEC6O43699 453 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 USP1O94782 785 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 KCNK5O95279 499 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 VAPBO95292 243 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 LDOC1O95751 146 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 RALBP11234 206 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 CEACAM1P13688 526 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 PAMP19021 973 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 AK4P27144 223 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ARNTP27540 789 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 AKT1P31749 480 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ACTR1BP42025 376 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ID4P47928 161 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ARCN1P48444 511 aaKnown RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 NOVA1P51513 510 aaKnown RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ARL4CP56559 192 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ACTR1AP61163 376 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 B4GALNT1Q00973 533 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 TRIP6Q15654 476 aaKnown RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 DBN1Q16643 649 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 HIF1AQ16665 826 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 BBS9Q3SYG4 887 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 MSS51Q4VC12 460 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 GLE1Q53GS7 698 aaKnown RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 DNTTIP2Q5QJE6 756 aaKnown RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 C6orf132Q5T0Z8 1188 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 KIAA0930Q6ICG6 404 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ZCCHC8Q6NZY4 707 aaKnown RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 TMEM220Q6QAJ8 160 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 CRTC3Q6UUV7 619 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 CERS6Q6ZMG9 384 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 CHST15Q7LFX5 561 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 LRRTM4Q86VH4 590 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 NRROSQ86YC3 692 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 TRAPPC5Q8IUR0 188 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ZNF547Q8IVP9 402 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 FAM181AQ8N9Y4 354 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 FAM46DQ8NEK8 389 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ZNF669Q96BR6 464 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 STAMBPL1Q96FJ0 436 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ZNF514Q96K75 400 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 CNDP2Q96KP4 475 aaKnown RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 FCRL3Q96P31 734 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 TTC1Q99614 292 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 TRIM56Q9BRZ2 755 aaKnown RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 CARD6Q9BX69 1037 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 GRHL1Q9NZI5 618 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 TAAR2Q9P1P5 351 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 FTSJ1Q9UET6 329 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 GPR34Q9UPC5 381 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ST14Q9Y5Y6 855 aa11.79□□□□□ -0.52
VPS13D-204ENST00000469054 DNMT3AQ9Y6K1 912 aaPredicted RBP11.79□□□□□ -0.52
VPS13D-204ENST00000469054 ASCC3Q8N3C0 2202 aaKnown RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 ZCWPW2A0A1B0GU75 182 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 OR2AG2A6NM03 316 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 GIPC1O14908 333 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 CD3EAPO15446 510 aaKnown RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 TNFSF14O43557 240 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 BANF1O75531 89 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 POP7O75817 140 aaKnown RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 TTC4O95801 387 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 ACP5P13686 325 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 ATP1B2P14415 290 aaPredicted RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 ZNF7P17097 686 aaPredicted RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 PGAM1P18669 254 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 DEKP35659 375 aaKnown RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 PPARGP37231 505 aaPredicted RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 CBLBQ13191 982 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 ITIH4Q14624 930 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 TRADDQ15628 312 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 PROX2Q3B8N5 592 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 AARS2Q5JTZ9 985 aaKnown RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 LYPLAL1Q5VWZ2 237 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 SLC30A9Q6PML9 568 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 DET1Q7L5Y6 550 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 C11orf96Q7Z7L8 435 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 GLRX5Q86SX6 157 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 CCNJLQ8IV13 435 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 PNPLA1Q8N8W4 532 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 SEC14L1Q92503 715 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 ART4Q93070 314 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 LRRC39Q96DD0 335 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 SGF29Q96ES7 293 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 CCDC97Q96F63 343 aaPredicted RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 APOLD1Q96LR9 279 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 EBNA1BP2Q99848 306 aaKnown RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 TIMM29Q9BSF4 260 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 NAT9Q9BTE0 207 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 BOCQ9BWV1 1114 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 DPEP2Q9H4A9 486 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 L2HGDHQ9H9P8 463 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 CATSPERZQ9NTU4 200 aa11.78□□□□□ -0.52
VPS13D-204ENST00000469054 SPATS2LQ9NUQ6 558 aaKnown RBP11.78□□□□□ -0.52
VPS13D-204ENST00000469054 SLC23A2Q9UGH3 650 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms