RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 PPFIA2O75334 1257 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 CDK14O94921 469 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 PRAMEF1O95521 474 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 AGTP01019 485 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 HOXB3P14651 431 aaPredicted RBP10.03□□□□□ -0.8
SF3A3-204ENST00000462258 SLC5A2P31639 672 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 ETV5P41161 510 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 CLCNKAP51800 687 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 LIMK2P53671 638 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 GSDMDP57764 484 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 CLN3Q13286 438 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 KLF1Q13351 362 aaPredicted RBP10.03□□□□□ -0.8
SF3A3-204ENST00000462258 NFATC2Q13469 925 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 OLIG2Q13516 323 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 TRA2AQ13595 282 aaKnown RBP eCLIP10.03□□□□□ -0.8
SF3A3-204ENST00000462258 ITGA9Q13797 1035 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 CHRNA6Q15825 494 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 SEPT7Q16181 437 aaKnown RBP10.03□□□□□ -0.8
SF3A3-204ENST00000462258 IYDQ6PHW0 289 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 ZNF574Q6ZN55 896 aaPredicted RBP10.03□□□□□ -0.8
SF3A3-204ENST00000462258 USP53Q70EK8 1073 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 ZNF547Q8IVP9 402 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 AVL9Q8NBF6 648 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 TTC13Q8NBP0 860 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 OR4D9Q8NGE8 314 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 OR10G6Q8NH81 332 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 DTX3LQ8TDB6 740 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 LRRC45Q96CN5 670 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 AHCYL2Q96HN2 611 aaKnown RBP10.03□□□□□ -0.8
SF3A3-204ENST00000462258 PPP1R2P1Q96PQ5 205 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 DPYSL5Q9BPU6 564 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 TSGA10Q9BZW7 698 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 IL26Q9NPH9 171 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 PRDM8Q9NQV8 689 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.03□□□□□ -0.8
SF3A3-204ENST00000462258 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.03□□□□□ -0.8
SF3A3-204ENST00000462258 TMEM9Q9P0T7 183 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 TMPRSS11EQ9UL52 423 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 ARL5AQ9Y689 179 aa10.03□□□□□ -0.8
SF3A3-204ENST00000462258 SDK2Q58EX2 2172 aa10.02□□□□□ -0.8
SF3A3-204ENST00000462258 AHCTF1Q8WYP5 2266 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 PRAMEF33A0A0G2JMD5 474 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 LILRA5A6NI73 299 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 OR5K4A6NMS3 321 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 GAPDHSO14556 408 aaPredicted RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 STX7O15400 261 aaKnown RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 PRAMEF10O60809 474 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 ZNF7P17097 686 aaPredicted RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 VCLP18206 1134 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 MPSTP25325 297 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 ADRA1AP35348 466 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 MAPK9P45984 424 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 EPHA4P54764 986 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 UBE2IP63279 158 aaKnown RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 TMEM115Q12893 351 aaPredicted RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 SQSTM1Q13501 440 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 PTPRCAPQ14761 206 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 TAF1AQ15573 450 aaPredicted RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 LDLRAP1Q5SW96 308 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 GPRC6AQ5T6X5 926 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 ARHGEF18Q6ZSZ5 1173 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 GPR155Q7Z3F1 870 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 C11orf96Q7Z7L8 435 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 TRIM48Q8IWZ4 208 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 DDHD1Q8NEL9 900 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 BRSK1Q8TDC3 778 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 SH3KBP1Q96B97 665 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 HES6Q96HZ4 224 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 TTC25Q96NG3 672 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 BBC3Q96PG8 261 aaPredicted RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 UBL7Q96S82 380 aaPredicted RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 TBL1YQ9BQ87 522 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 CPNE5Q9HCH3 593 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 WDR70Q9NW82 654 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 SMOXQ9NWM0 555 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 FOXJ2Q9P0K8 574 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 CPNE7Q9UBL6 633 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 SLC23A2Q9UGH3 650 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 ACSL6Q9UKU0 697 aa10.02□□□□□ -0.81
SF3A3-204ENST00000462258 R3HDM2Q9Y2K5 976 aaKnown RBP10.02□□□□□ -0.81
SF3A3-204ENST00000462258 MGAQ8IWI9 3026 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 TEX51A0A1B0GUA7 166 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 C5orf60A6NFR6 353 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 PRR19A6NJB7 356 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 OR2AG2A6NM03 316 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 C2orf81A6NN90 581 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 C9orf172C9J069 976 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 NVLO15381 856 aaKnown RBP10.01□□□□□ -0.81
SF3A3-204ENST00000462258 ARHGAP6O43182 974 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 KRT86O43790 486 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 UGT1A9O60656 530 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 LIPCP11150 499 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 CCL4P13236 92 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 UGT1A6P19224 532 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 LPOP22079 712 aaPredicted RBP10.01□□□□□ -0.81
SF3A3-204ENST00000462258 UGT1A1P22309 533 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 UGT1A4P22310 534 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 AKT1P31749 480 aa10.01□□□□□ -0.81
SF3A3-204ENST00000462258 UGT1A3P35503 534 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms