RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 B3GNT8Q7Z7M8 397 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 SLC9B2Q86UD5 537 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 PIM3Q86V86 326 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 AVL9Q8NBF6 648 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 DDHD1Q8NEL9 900 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 SH3KBP1Q96B97 665 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 LIN37Q96GY3 246 aaPredicted RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 ZNF578Q96N58 590 aaPredicted RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 SLC38A3Q99624 504 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 C19orf43Q9BQ61 176 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 FOXP3Q9BZS1 431 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 ASB8Q9H765 288 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 SARS2Q9NP81 518 aaKnown RBP14.98□□□□□ -0.01
LIMS3-201ENST00000437679 KCNK4Q9NYG8 393 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 SLC23A2Q9UGH3 650 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 DNAJC16Q9Y2G8 782 aa14.98□□□□□ -0.01
LIMS3-201ENST00000437679 ZNF106Q9H2Y7 1883 aaKnown RBP14.97□□□□□ -0.01
LIMS3-201ENST00000437679 A6NCN8 305 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 GPR39O43194 453 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 ZSCAN12O43309 604 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 LDB2O43679 373 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 DXOO77932 396 aaKnown RBP14.97□□□□□ -0.01
LIMS3-201ENST00000437679 GAS8O95995 478 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 TPH1P17752 444 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 MSH3P20585 1137 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 AKT1P31749 480 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 CXCR5P32302 372 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 PPM1FP49593 454 aaPredicted RBP14.97□□□□□ -0.01
LIMS3-201ENST00000437679 TMPRSS15P98073 1019 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 HHEXQ03014 270 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 SEPT6Q14141 434 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 SIX1Q15475 284 aaPredicted RBP14.97□□□□□ -0.01
LIMS3-201ENST00000437679 DRICH1Q6PGQ1 229 aaPredicted RBP14.97□□□□□ -0.01
LIMS3-201ENST00000437679 USP53Q70EK8 1073 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 ZNF547Q8IVP9 402 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 OR13C4Q8NGS5 318 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 FGF11Q92914 225 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 DCBLD2Q96PD2 775 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 ETNK1Q9HBU6 452 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 PRDM8Q9NQV8 689 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 PAK5Q9P286 719 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 CRLS1Q9UJA2 301 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 JRKLQ9Y4A0 524 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 PCDHGA8Q9Y5G5 932 aa14.97□□□□□ -0.01
LIMS3-201ENST00000437679 PDZK1P1A8MUH7 402 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 RRP8O43159 456 aaKnown RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 TLX3O43711 291 aaPredicted RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 KCNJ13O60928 360 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 ETS1P14921 441 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 ITGALP20701 1170 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 IDSP22304 550 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 CD1CP29017 333 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 ERVPABLB-1P60509 514 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 GPLD1P80108 840 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 XIAPP98170 497 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 ZFP36L1Q07352 338 aaKnown RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 NFATC2Q13469 925 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 POU6F1Q14863 301 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 PHF19Q5T6S3 580 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 IGF2-ASQ6U949 168 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 PPP1R21Q6ZMI0 780 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 RAB11FIP2Q7L804 512 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 GSTA5Q7RTV2 222 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 AMZ2Q86W34 360 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 FBXO39Q8N4B4 442 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 RASGEF1AQ8N9B8 481 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 DNAAF3Q8N9W5 541 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 SNIP1Q8TAD8 396 aaKnown RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 ULK4Q96C45 1275 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 DCUN1D1Q96GG9 259 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 AHCYL2Q96HN2 611 aaKnown RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 ZNF514Q96K75 400 aaPredicted RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 DPYSL5Q9BPU6 564 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 ZMYND15Q9H091 742 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 RDH14Q9HBH5 336 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 RAB6BQ9NRW1 208 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 THSD1Q9NS62 852 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 HOMER3Q9NSC5 361 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 PIH1D1Q9NWS0 290 aaKnown RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 CPNE7Q9UBL6 633 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 DRG1Q9Y295 367 aaKnown RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 DNMT3AQ9Y6K1 912 aaPredicted RBP14.96□□□□□ -0.01
LIMS3-201ENST00000437679 SLC30A1Q9Y6M5 507 aa14.96□□□□□ -0.01
LIMS3-201ENST00000437679 ZZEF1O43149 2961 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 IGHV1OR21-1A0A087WYE8 117 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 A0A1W2PNU3 283 aaPredicted RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 OR2AG2A6NM03 316 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 PLD2O14939 933 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 POP7O75817 140 aaKnown RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 RALBP11234 206 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 MSNP26038 577 aaKnown RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 CA5AP35218 305 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 MLLT3P42568 568 aaPredicted RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 CTSCP53634 463 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 CDH17Q12864 832 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 SEMA5AQ13591 1074 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 SEPT7Q16181 437 aaKnown RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 NKAIN2Q5VXU1 208 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 TMEM220Q6QAJ8 160 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms