RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 TRBC1P01850 177 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 MRPS5P82675 430 aaKnown RBP14.38□□□□□ -0.11
PTPRU-204ENST00000428026 SNAPC1Q16533 368 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 LCN1P1Q5VSP4 162 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 EEF1DP3Q658K8 133 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 UBE2E3Q969T4 207 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 B3GALT6Q96L58 329 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 CSPG4P5Q96PW8 444 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 AARSD1Q9BTE6 412 aaKnown RBP14.38□□□□□ -0.11
PTPRU-204ENST00000428026 DSN1Q9H410 356 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 TNFRSF11BO00300 401 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 MDM4O15151 490 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 CDKN2BP42772 138 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 FUT2Q10981 343 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 NADK2Q4G0N4 442 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 FNDC3BQ53EP0 1204 aaKnown RBP14.38□□□□□ -0.11
PTPRU-204ENST00000428026 KLHDC10Q6PID8 442 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 RHBDF2Q6PJF5 856 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 ZYG11AQ6WRX3 759 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 PJA1Q8NG27 643 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 OR6K2Q8NGY2 324 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 ZNF607Q96SK3 696 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 TCF25Q9BQ70 676 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 PCDHAC1Q9H158 963 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 UCKL1Q9NWZ5 548 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 GRHL1Q9NZI5 618 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 IFNA16P05015 189 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 MMP8P22894 467 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 ELP6Q0PNE2 266 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 SCRN3Q0VDG4 424 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 IL23RQ5VWK5 629 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 TMPRSS11AQ6ZMR5 421 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 ANKS1BQ7Z6G8 1248 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 TEFMQ96QE5 360 aaKnown RBP14.38□□□□□ -0.11
PTPRU-204ENST00000428026 PRDM8Q9NQV8 689 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 PRAMEF33A0A0G2JMD5 474 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 PLIN3O60664 434 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 PRAMEF10O60809 474 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 FUT4P22083 530 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 ARPC4P59998 168 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 CPTPQ5TA50 214 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 ANXA8L1Q5VT79 327 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 SLC9A4Q6AI14 798 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 CES5AQ6NT32 575 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 OR8H3Q8N146 312 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 PLD5Q8N7P1 536 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 LRRC20Q8TCA0 184 aa14.38□□□□□ -0.11
PTPRU-204ENST00000428026 GATA5Q9BWX5 397 aaPredicted RBP14.38□□□□□ -0.11
PTPRU-204ENST00000428026 TRIT1Q9H3H1 467 aaKnown RBP14.38□□□□□ -0.11
PTPRU-204ENST00000428026 THG1LQ9NWX6 298 aaKnown RBP14.38□□□□□ -0.11
PTPRU-204ENST00000428026 ABHD14A-ACY1A0A1B0GW23 586 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 GPR25O00155 361 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 PLK4O00444 970 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 H6PDO95479 791 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 CSH1P0DML2 217 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 CSH2P0DML3 217 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 SELPP16109 830 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 GNA12Q03113 381 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 ENPEPQ07075 957 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 COLGALT2Q8IYK4 626 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 IPCEF1Q8WWN9 437 aaPredicted RBP14.37□□□□□ -0.11
PTPRU-204ENST00000428026 KAT2AQ92830 837 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 TBATAQ96M53 351 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 MFSD14AQ96MC6 490 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 MCMBPQ9BTE3 642 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 FAM105AQ9NUU6 356 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 DNAAF2Q9NVR5 837 aaKnown RBP14.37□□□□□ -0.11
PTPRU-204ENST00000428026 FBXL21Q9UKT6 434 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 LRCH4O75427 683 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 PCDH1Q08174 1060 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 METTL21CQ5VZV1 264 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 C10orf82Q8WW14 230 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 MNTQ99583 582 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 C2orf49Q9BVC5 232 aaPredicted RBP14.37□□□□□ -0.11
PTPRU-204ENST00000428026 SLC28A3Q9HAS3 691 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 LRTM1Q9HBL6 345 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 PCDHGA10Q9Y5H3 936 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 TPSB2P20231 275 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 GNPDA1P46926 289 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 MANFP55145 182 aaKnown RBP14.37□□□□□ -0.11
PTPRU-204ENST00000428026 CDH15P55291 814 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 TPSAB1Q15661 275 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.37□□□□□ -0.117e-7■■■■■ 45.2
PTPRU-204ENST00000428026 ANKRD46Q86W74 232 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 XYLT1Q86Y38 959 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 GPR152Q8TDT2 470 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 CLEC4DQ8WXI8 215 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 GLOD4Q9HC38 313 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 C8orf4Q9NR00 106 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 PCDHB9Q9Y5E1 797 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 IQCF5A8MTL0 148 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 PGRP06401 933 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 MTA1Q13330 715 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 PTCD2Q8WV60 388 aaKnown RBP14.37□□□□□ -0.11
PTPRU-204ENST00000428026 KBTBD7Q8WVZ9 684 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 GTPBP3Q969Y2 492 aaKnown RBP14.37□□□□□ -0.11
PTPRU-204ENST00000428026 KCTD15Q96SI1 283 aaPredicted RBP14.37□□□□□ -0.11
PTPRU-204ENST00000428026 EBF2Q9HAK2 575 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 SLC7A8Q9UHI5 535 aa14.37□□□□□ -0.11
PTPRU-204ENST00000428026 OR10H1Q9Y4A9 318 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms