RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 MARK2Q7KZI7 788 aaKnown RBP16.79■□□□□ 0.28
COL7A1-202ENST00000422991 LDB1Q86U70 411 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-202ENST00000422991 CILP2Q8IUL8 1156 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 HID1Q8IV36 788 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 LMNTD2Q8IXW0 634 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 PHACTR4Q8IZ21 702 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 RASGEF1AQ8N9B8 481 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 CALML6Q8TD86 181 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.79■□□□□ 0.28
COL7A1-202ENST00000422991 ELF4Q99607 663 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-202ENST00000422991 BOCQ9BWV1 1114 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 CAAP1Q9H8G2 361 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 RMI1Q9H9A7 625 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 LRRC4CQ9HCJ2 640 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 CYP4F12Q9HCS2 524 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 DNAJC28Q9NX36 388 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 MOCS1Q9NZB8 636 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 NINJ2Q9NZG7 142 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 SUFUQ9UMX1 484 aa16.79■□□□□ 0.28
COL7A1-202ENST00000422991 PCYT1BQ9Y5K3 369 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-202ENST00000422991 TDRD6O60522 2096 aaKnown RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 PIKFYVEQ9Y2I7 2098 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 CFAP99D6REC4 459 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 NUAK1O60285 661 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 DFNA5O60443 496 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 FOXD2O60548 495 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 SPAG6O75602 509 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 CDK14O94921 469 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 RALBP11234 206 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 JUNDP17535 347 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 PPARGP37231 505 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 SLC1A2P43004 574 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 RXRGP48443 463 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 ARHGAP8P85298 464 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 GTF2H3Q13889 308 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 SLMAPQ14BN4 828 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 SHBQ15464 509 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 PRAMEF14Q5SWL7 426 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 CCNI2Q6ZMN8 369 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 PRR23CQ6ZRP0 262 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 SDCCAG8Q86SQ7 713 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 DENND6AQ8IWF6 608 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 CNTN4Q8IWV2 1026 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 RBFAQ8N0V3 343 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 SCG3Q8WXD2 468 aaKnown RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 DCUN1D1Q96GG9 259 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 TTC25Q96NG3 672 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 TCF12Q99081 682 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 TTC1Q99614 292 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 GTPBP2Q9BX10 602 aaKnown RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 TCEAL2Q9H3H9 227 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 CDC42EP4Q9H3Q1 356 aaKnown RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 GAREM1Q9H706 876 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 CARS2Q9HA77 564 aaKnown RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 IL21RQ9HBE5 538 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 IARS2Q9NSE4 1012 aaKnown RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 APOBEC3BQ9UH17 382 aaKnown RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 MOSPD1Q9UJG1 213 aa16.78■□□□□ 0.28
COL7A1-202ENST00000422991 ZFC3H1O60293 1989 aaKnown RBP16.78■□□□□ 0.28
COL7A1-202ENST00000422991 CEP250Q9BV73 2442 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 A0A1B0GTQ1 180 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 TCRBV9S1A1TA0A576 114 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 H3BM21 787 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 YKT6O15498 198 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 SGTAO43765 313 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 OR1I1O60431 355 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 SDHBP21912 280 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 PMLP29590 882 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 NSG1P42857 185 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 GNPDA1P46926 289 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 ARRB1P49407 418 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-202ENST00000422991 BLKP51451 505 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 CTSCP53634 463 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 HNRNPKP61978 463 aaKnown RBP eCLIP16.77■□□□□ 0.28
COL7A1-202ENST00000422991 MGAT5Q09328 741 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 NAA30Q147X3 362 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-202ENST00000422991 KYNUQ16719 465 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 PYCR3Q53H96 274 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 UBAP2Q5T6F2 1119 aaKnown RBP16.77■□□□□ 0.28
COL7A1-202ENST00000422991 RNF187Q5TA31 235 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-202ENST00000422991 ZNF449Q6P9G9 518 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 C3orf62Q6ZUJ4 267 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 RD3Q7Z3Z2 195 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 GALNT13Q8IUC8 556 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 ZNF547Q8IVP9 402 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 MINDY1Q8N5J2 469 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 OR2I1PQ8NGU4 316 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 OR2M4Q96R27 311 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 TXLNGYQ9BZA5 131 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 SLC13A1Q9BZW2 595 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 VPS37BQ9H9H4 285 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 PPANQ9NQ55 473 aaKnown RBP16.77■□□□□ 0.28
COL7A1-202ENST00000422991 FBXO5Q9UKT4 447 aa16.77■□□□□ 0.28
COL7A1-202ENST00000422991 SCAMP1O15126 338 aa16.76■□□□□ 0.27
COL7A1-202ENST00000422991 GRID2O43424 1007 aa16.76■□□□□ 0.27
COL7A1-202ENST00000422991 NDUFS3O75489 264 aa16.76■□□□□ 0.27
COL7A1-202ENST00000422991 S1PR4O95977 384 aa16.76■□□□□ 0.27
COL7A1-202ENST00000422991 TNFP01375 233 aa16.76■□□□□ 0.27
COL7A1-202ENST00000422991 C1QAP02745 245 aa16.76■□□□□ 0.27
COL7A1-202ENST00000422991 ATP1B2P14415 290 aaPredicted RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms