RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZSCAN5AQ9BUG6 496 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 C10orf88Q9H8K7 445 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 NHEJ1Q9H9Q4 299 aaPredicted RBP11.4□□□□□ -0.59
USP4-204ENST00000416417 MAGEE1Q9HCI5 957 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 ABHD10Q9NUJ1 306 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 SIDT1Q9NXL6 827 aaKnown RBP11.4□□□□□ -0.59
USP4-204ENST00000416417 TFR2Q9UP52 801 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 WDR37Q9Y2I8 494 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 MYO18BQ8IUG5 2567 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 SSU72P8A0A1W2PR75 194 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 ZNF891A8MT65 544 aaPredicted RBP11.39□□□□□ -0.59
USP4-204ENST00000416417 PPP1R12AO14974 1030 aaPredicted RBP11.39□□□□□ -0.59
USP4-204ENST00000416417 CHUKO15111 745 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 KMOO15229 486 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 CAPN5O15484 640 aaPredicted RBP11.39□□□□□ -0.59
USP4-204ENST00000416417 UGT1A9O60656 530 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 MTA2O94776 668 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 UBXN7O94888 489 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 CDK14O94921 469 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 NDST3O95803 873 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 SLC2A4P14672 509 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 AMD1P17707 334 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 UGT1A6P19224 532 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 NFKB1P19838 968 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 COMTP21964 271 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 UGT1A1P22309 533 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 UGT1A4P22310 534 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 CSRP3P50461 194 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 EPHA4P54764 986 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 CDC20Q12834 499 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 PTPRCAPQ14761 206 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 TEX44Q53QW1 395 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 XKR5Q6UX68 686 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 FAM92BQ6ZTR7 304 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 TMEM26Q6ZUK4 368 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 RAVER1Q8IY67 606 aaKnown RBP11.39□□□□□ -0.59
USP4-204ENST00000416417 C9orf72Q96LT7 481 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.39□□□□□ -0.59
USP4-204ENST00000416417 UGT1A7Q9HAW7 530 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 UGT1A10Q9HAW8 530 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 UGT1A8Q9HAW9 530 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 FBXO8Q9NRD0 319 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 ZNHIT6Q9NWK9 470 aaKnown RBP11.39□□□□□ -0.59
USP4-204ENST00000416417 BSNQ9UPA5 3926 aa11.39□□□□□ -0.59
USP4-204ENST00000416417 MN1Q10571 1320 aaPredicted RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 A0A0A6YYK5 440 aaPredicted RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 LILRA5A6NI73 299 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 OR5K4A6NMS3 321 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 ARHGAP6O43182 974 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 MFAP3LO75121 409 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 RASSF9O75901 435 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 DLGAP3O95886 979 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 SFTPCP11686 197 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 XRCC1P18887 633 aaPredicted RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 NR1D1P20393 614 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 MAP4P27816 1152 aaKnown RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 PBLDP30039 288 aaPredicted RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 CDKN2BP42772 138 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 CCR10P46092 362 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 CLCNKAP51800 687 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 WNT3AP56704 352 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 DCDC1P59894 354 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 TLE1Q04724 770 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 WASHC5Q12768 1159 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 GPR18Q14330 331 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 PRKD1Q15139 912 aaPredicted RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 CHRNA6Q15825 494 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 ODF2Q5BJF6 829 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 SIRPB2Q5JXA9 342 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 KDELC1Q6UW63 502 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 FAM151BQ6UXP7 276 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 MICALCLQ6ZW33 695 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 ZC3H18Q86VM9 953 aaKnown RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 PLXDC1Q8IUK5 500 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 TRAPPC5Q8IUR0 188 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 TTC30BQ8N4P2 665 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 GALNT6Q8NCL4 622 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 RNF214Q8ND24 703 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 STARD8Q92502 1023 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 KIAA1143Q96AT1 154 aaPredicted RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 SLC45A3Q96JT2 553 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 TEKT5Q96M29 485 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 CCDC42Q96M95 316 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 TEFMQ96QE5 360 aaKnown RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 OR6C1Q96RD1 312 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 ULBP3Q9BZM4 244 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 PSMD13Q9UNM6 376 aa11.38□□□□□ -0.59
USP4-204ENST00000416417 TMEM184BQ9Y519 407 aaPredicted RBP11.38□□□□□ -0.59
USP4-204ENST00000416417 PRR19A6NJB7 356 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 ZNF487B1APH4 448 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 SPOPO43791 374 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 CST8O60676 142 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 KIAA0754O94854 1291 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 C9P02748 559 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 FURINP09958 794 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 ZFXP17010 805 aaPredicted RBP11.37□□□□□ -0.59
USP4-204ENST00000416417 STAT5AP42229 794 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 ARHGAP25P42331 645 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 MARCKSL1P49006 195 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 CTSCP53634 463 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms