RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SLC6A13Q9NSD5 602 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 EIF2B4Q9UI10 523 aaKnown RBP9.77□□□□□ -0.85
SS18-203ENST00000415083 ZNF510Q9Y2H8 683 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 SLC27A5Q9Y2P5 690 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 FADS3Q9Y5Q0 445 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 LCHNA4D1U4 455 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 SUPT3HB4E1H0 165 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 OR7A17O14581 309 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 ANGPT2O15123 496 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 SUPT3HO75486 399 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 OR4F21O95013 312 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 FASP25445 335 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 THPOP40225 353 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 PBX3P40426 434 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 MAPK10P53779 464 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 BNIP2Q12982 314 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 GPR107Q5VW38 600 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 CST9Q5W186 159 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 FAM117BQ6P1L5 589 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 TTC33Q6PID6 262 aaPredicted RBP9.77□□□□□ -0.85
SS18-203ENST00000415083 XKR5Q6UX68 686 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 TMEM179BQ7Z7N9 219 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 COLGALT2Q8IYK4 626 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 MAGEE2Q8TD90 523 aaPredicted RBP9.77□□□□□ -0.85
SS18-203ENST00000415083 CYGBQ8WWM9 190 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 MUS81Q96NY9 551 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 MGME1Q9BQP7 344 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 TRIM54Q9BYV2 358 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 CXorf21Q9HAI6 301 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 TMEM165Q9HC07 324 aa9.77□□□□□ -0.85
SS18-203ENST00000415083 IDO1P14902 403 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 DGKQP52824 942 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 STX1BP61266 288 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 NFYCQ13952 458 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 ANKRD26P1Q6NSI1 321 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 TMEM214Q6NUQ4 689 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 C17orf99Q6UX52 265 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 KCTD8Q6ZWB6 473 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 FBXO39Q8N4B4 442 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 SEPT8Q92599 483 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 MBOAT4Q96T53 435 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 SEPHS2Q99611 448 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 OSBPL6Q9BZF3 934 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 ZFYVE28Q9HCC9 887 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 TRMT13Q9NUP7 481 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 GMEB1Q9Y692 573 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 PLXNB3Q9ULL4 1909 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 MOXD2PA6NHM9 499 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 AREL1O15033 823 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 ESRRBO95718 433 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 CPNE6O95741 557 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 OGNP20774 298 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 PIGAP37287 484 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 CAPGP40121 348 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 MTPNP58546 118 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 FOXM1Q08050 763 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 TRIP4Q15650 581 aaPredicted RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 ZIK1Q3SY52 487 aaPredicted RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 ZFAND4Q86XD8 727 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 NAT16Q8N8M0 369 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 GOLM1Q8NBJ4 401 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 BTN2A3PQ96KV6 586 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 C8orf48Q96LL4 319 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 ARHGAP39Q9C0H5 1083 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 HIPK3Q9H422 1215 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 ELOVL2Q9NXB9 296 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 CIDEBQ9UHD4 219 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 ZNF711Q9Y462 761 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 ANAPC1Q9H1A4 1944 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 GPR182O15218 404 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 RAMP2O60895 175 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 B3GALT4O96024 378 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 FGF1P05230 155 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 CYBAP13498 195 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 PSMA4P25789 261 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 OR1E1P30953 314 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 RPS9P46781 194 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 POLR2JP52435 117 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 TSPY1Q01534 308 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 CTU2Q2VPK5 515 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 CCSAPQ6IQ19 270 aaPredicted RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 GPR141Q7Z602 305 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 PATL1Q86TB9 770 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 RBM23Q86U06 439 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 AFAP1L2Q8N4X5 818 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 OR13F1Q8NGS4 319 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 ZNF583Q96ND8 569 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 MTG1Q9BT17 334 aaPredicted RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 CHID1Q9BWS9 393 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 AMBRA1Q9C0C7 1298 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 UPF3AQ9H1J1 476 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 SMPD3Q9NY59 655 aaPredicted RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 PTBP2Q9UKA9 531 aaKnown RBP9.76□□□□□ -0.85
SS18-203ENST00000415083 RNF112Q9ULX5 631 aa9.76□□□□□ -0.85
SS18-203ENST00000415083 A0A087WXM4 84 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 GLTPD2A6NH11 291 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 LSM1O15116 133 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 ADAMTS4O75173 837 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 DUSP11O75319 330 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 SLC22A3O75751 556 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms