RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 RPS24P62847 133 aaKnown RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 TSNQ15631 228 aaKnown RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 MYLK3Q32MK0 819 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 ZNF776Q68DI1 518 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 IRGCQ6NXR0 463 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 GALNT18Q6P9A2 607 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 TBC1D21Q8IYX1 336 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 MIR1-1HGQ9H1L0 117 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 CAB39LQ9H9S4 337 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 CALML5Q9NZT1 146 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 HSFX1Q9UBD0 423 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 ZNF490Q9ULM2 529 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 MYRFQ9Y2G1 1151 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 ARHGEF9O43307 516 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 SHOX2O60902 331 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 EIF2S1P05198 315 aaKnown RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 HNRNPLP14866 589 aaKnown RBP eCLIP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 RPS7P62081 194 aaKnown RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 CYS1Q717R9 158 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 SLC30A8Q8IWU4 369 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 DPP10Q8N608 796 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 NUS1Q96E22 293 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 AGAP2Q99490 1192 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 LPIN3Q9BQK8 851 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 EFCAB11Q9BUY7 163 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 TBC1D10AQ9BXI6 508 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 NMUR1Q9HB89 426 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 HOXA11P31270 313 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 NEK2P51955 445 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 CDC42P60953 191 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 GTF2H2Q13888 395 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 PRKD1Q15139 912 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 POM121L1PQ3SYA9 428 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 TCHHL1Q5QJ38 904 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 GTF2H2CQ6P1K8 395 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 DHDDSQ86SQ9 333 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 ING5Q8WYH8 240 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 CDKN2AIPNLQ96HQ2 116 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 ZMAT2Q96NC0 199 aaKnown RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 ZNF184Q99676 751 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 AARSD1Q9BTE6 412 aaKnown RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 FBRSQ9HAH7 460 aa11.86□□□□□ -0.51
PTPRF-205ENST00000414879 MRPL42Q9Y6G3 142 aaKnown RBP11.86□□□□□ -0.51
PTPRF-205ENST00000414879 UPK3BL1B0FP48 263 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 UPK3BL2E5RIL1 263 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 NR2F1P10589 423 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 POU1F1P28069 291 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 SLC16A1P53985 500 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 IL5RAQ01344 420 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 KLF10Q13118 480 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 RAB33AQ14088 237 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 AMZ2Q86W34 360 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 TWIST2Q8WVJ9 160 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 PGAP3Q96FM1 320 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 TPD52L3Q96J77 140 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 LMAN2LQ9H0V9 348 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 NEK6Q9HC98 313 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 POLR3BQ9NW08 1133 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 RUVBL1Q9Y265 456 aaKnown RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 TMEM63AO94886 807 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 ADH1BP00325 375 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 GSRP00390 522 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 UBTFL6P0CB48 400 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 EPHA3P29320 983 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 GDF10P55107 478 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 MPP1Q00013 466 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 SRSF11Q05519 484 aaKnown RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 SP140Q13342 867 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 CDC73Q6P1J9 531 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 PRR23BQ6ZRT6 265 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 C7orf57Q8NEG2 295 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 BHLHE22Q8NFJ8 381 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 MTFMTQ96DP5 389 aaKnown RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 KIFC1Q9BW19 673 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 TMEM245Q9H330 911 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 THUMPD1Q9NXG2 353 aaKnown RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 KLF11O14901 512 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 INAVAQ3KP66 663 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 LACTB2Q53H82 288 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 SH3PXD2AQ5TCZ1 1133 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 DNAJC14Q6Y2X3 702 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 ZNF605Q86T29 641 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 LRRC15Q8TF66 581 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 POF1BQ8WVV4 589 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 RIT1Q92963 219 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 IRGMA1A4Y4 181 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 ANKRD66B4E2M5 251 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 TK2O00142 265 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 OR6A2O95222 327 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 CHRNA1P02708 482 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 IFNA16P05015 189 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 SLC35G6P0C7Q6 338 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 GNSP15586 552 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 SLC6A2P23975 617 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 TAS2R39P59534 338 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 ELF3P78545 371 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 SF1Q15637 639 aaKnown RBP11.85□□□□□ -0.51
PTPRF-205ENST00000414879 TMEM220Q6QAJ8 160 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 LRRC70Q7Z2Q7 622 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms