RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 BBIP1A8MTZ0 92 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 RHOBTB1O94844 696 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 GLP2RO95838 553 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 MBL2P11226 248 aaPredicted RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 MTHFRP42898 656 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 GALNT1Q10472 559 aaPredicted RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 EIF4EBP2Q13542 120 aaPredicted RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 SPARTQ8N0X7 666 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 TTC9BQ8N6N2 239 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 GABPB2Q8TAK5 448 aaPredicted RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 HERC2P3Q9BVR0 1158 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 TDRD1Q9BXT4 1180 aaKnown RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 MFSD1Q9H3U5 465 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 MRM3Q9HC36 420 aaKnown RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 KCNH4Q9UQ05 1017 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 PPP2R3BQ9Y5P8 575 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 DOCK3Q8IZD9 2030 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 ZNF236Q9UL36 1845 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 NIPSNAP2O75323 286 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 SULT1C4O75897 302 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 G6PDP11413 515 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 ATP4BP51164 291 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 GTDC1Q4AE62 458 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 AGMOQ6ZNB7 445 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 SIDT2Q8NBJ9 832 aaKnown RBP20.78■□□□□ 0.92
CTCF-202ENST00000401394 PSD4Q8NDX1 1056 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 ABHD11Q8NFV4 315 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 MYOCQ99972 504 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 TINF2Q9BSI4 451 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 TRMOQ9BU70 441 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 TBCCD1Q9NVR7 557 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 ST3GAL5Q9UNP4 418 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 MBLAC1A4D2B0 266 aaPredicted RBP20.78■□□□□ 0.92
CTCF-202ENST00000401394 PDHXO00330 501 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 DFNA5O60443 496 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 COQ9O75208 318 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 BCAS1O75363 584 aaPredicted RBP20.78■□□□□ 0.92
CTCF-202ENST00000401394 CNPP09543 421 aaKnown RBP20.78■□□□□ 0.92
CTCF-202ENST00000401394 DNAJB1P25685 340 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 GRK4P32298 578 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 MOGQ16653 247 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 FSCN1Q16658 493 aaKnown RBP20.78■□□□□ 0.92
CTCF-202ENST00000401394 PGS1Q32NB8 556 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 RAP1GAP2Q684P5 730 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 ZNF773Q6PK81 442 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 C10orf111Q8N326 155 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 PDPRQ8NCN5 879 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 CNIH3Q8TBE1 160 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 PTCD2Q8WV60 388 aaKnown RBP20.78■□□□□ 0.92
CTCF-202ENST00000401394 CSNK1G1Q9HCP0 422 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 ATP13A1Q9HD20 1204 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 INTS10Q9NVR2 710 aaKnown RBP20.78■□□□□ 0.92
CTCF-202ENST00000401394 CDH9Q9ULB4 789 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 TRIM17Q9Y577 477 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 SPO11Q9Y5K1 396 aa20.78■□□□□ 0.92
CTCF-202ENST00000401394 RRN3P2A6NIE6 340 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 SNAP91O60641 907 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 CBFA2T3O75081 653 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 F2P00734 622 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 GPIP06744 558 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 FGF4P08620 206 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 DNAJB2P25686 324 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 MAPK11Q15759 364 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 PRR23BQ6ZRT6 265 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 GPR142Q7Z601 462 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 ZC3H15Q8WU90 426 aaKnown RBP20.77■□□□□ 0.92
CTCF-202ENST00000401394 HGH1Q9BTY7 390 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 RBM47A0AV96 593 aaKnown RBP20.77■□□□□ 0.92
CTCF-202ENST00000401394 SLC7A4O43246 635 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 ALPLP05186 524 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 IDO1P14902 403 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 CDH3P22223 829 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 CRHBPP24387 322 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 EIF2B2P49770 351 aaKnown RBP20.77■□□□□ 0.92
CTCF-202ENST00000401394 LCP2Q13094 533 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 Q6ZSR9 355 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 PHACTR4Q8IZ21 702 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 GPC2Q8N158 579 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 TMEM199Q8N511 208 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 ZFP90Q8TF47 636 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 NSMCE2Q96MF7 247 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 BEGAINQ9BUH8 593 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 FAM105AQ9NUU6 356 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 AIG1Q9NVV5 245 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 ABI2Q9NYB9 513 aaPredicted RBP20.77■□□□□ 0.92
CTCF-202ENST00000401394 FLRT1Q9NZU1 646 aa20.77■□□□□ 0.92
CTCF-202ENST00000401394 ZBBXA8MT70 800 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 MITFO75030 526 aaPredicted RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 PRSS23O95084 383 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 CYP4B1P13584 511 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 EFEMP1Q12805 493 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 SPIDRQ14159 915 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 PTGR1Q14914 329 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 CCL14Q16627 93 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 GTF2IRD2BQ6EKJ0 949 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 RAB44Q7Z6P3 723 aaPredicted RBP20.76■□□□□ 0.91
CTCF-202ENST00000401394 GALNT5Q7Z7M9 940 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 DSG4Q86SJ6 1040 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 SAPCD2Q86UD0 394 aa20.76■□□□□ 0.91
CTCF-202ENST00000401394 GTF2IRD2Q86UP8 949 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 158.5 ms